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Overture Score

Transfer data quickly and easily to and from any cloud-based storage system.

Cancer Genomics
Cloud Storage & Transfer

Java
Shell
Makefile
+ 1

Overture Song

Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.

Cancer Genomics
Metadata Management
Metadata Validation

Java
Python
Shell
+ 5

parareal

This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.

High performance computing
Numerical analysis

CSS
Jupyter Notebook
Python
+ 5

PowerSensor3

PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.

GPU
High performance computing

C
C++
Python
+ 3

PSRDADA python

If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.

Cython
Python
Makefile

python-pcl

Use the industry-standard Point Cloud Library from within Python.

Big data
High performance computing

Python
C++
Makefile
+ 2

Tissue Simulation Toolkit

Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.

Cellular Potts Model
Chemotaxis
Embryology
+ 1

C++
Python
Cuda
+ 5

UFEMISM2.0

The successor of UFEMISM, has all of its features (and more?), but is based on the distributed architecture introduced in minimism.

Finite volume method
ice sheet
MPI
+ 1

Fortran
MATLAB
Makefile
+ 2

XrayTIFF2h5

This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.

Optimized data handling
Workflows

Python
Makefile