All software
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- Java
- Shell
- Dockerfile
- + 1
Overture Ego
A stateless authorization and user management service.
- Data Indexing
- Elasticsearch Automation
- Java
- Shell
- Makefile
- + 1
Overture Maestro
Organizing your distributed data into one index.
- Data Indexing
- Elasticsearch Automation
- Java
- Groovy
- Makefile
- + 1
Overture Score
Transfer data quickly and easily to and from any cloud-based storage system.
- Cancer Genomics
- Cloud Storage & Transfer
- Java
- Shell
- Makefile
- + 1
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- Java
- Python
- Shell
- + 7
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- CSS
- Jupyter Notebook
- Python
- + 5
PSRDADA python
If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.
- Cython
- Python
- Makefile
python-pcl
Use the industry-standard Point Cloud Library from within Python.
- Big data
- High performance computing
- Python
- C++
- Makefile
- + 2
Remote BMI
Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API
- Basic Model Interface
- BMI
- julia
- + 4
- Julia
- Python
- R
- + 3
ROOT
An open-source data analysis framework used by high energy physics and others.
- C++
- C
- JavaScript
- + 28
Tissue Simulation Toolkit
Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.
- Cellular Potts Model
- Chemotaxis
- Embryology
- + 1
- C++
- Python
- Cuda
- + 5
UFEMISM2.0
The successor of UFEMISM, has all of its features (and more?), but is based on the distributed architecture introduced in minimism.
- Finite volume method
- ice sheet
- MPI
- + 1
- Fortran
- MATLAB
- Python
- + 6