All software

VU-Lab

This is the configuration and documentation page of the LARA lab automation setup at the VU. It incorporates SiLA servers for robotic arm, shakers and a microplate reader and runs the LARA lab automation framework for scheduling and orchestration.

WebSemantic

WebSemantic helps language models run scientific software safely. From one code description it generates a readable contract, a validation ontology and FAIR metadata. Tests show it sharply reduces premature calculations and guessing of vague terms, preventing large errors.

welcome-to-github

Public portal and research gateway for an edge-first AI research system spanning agent research, evidence engineering, research infrastructure, digital archaeology, and deterministic knowledge lifecycles

Winnow

Confidence control and FDR estimation for de novo peptide sequencing

wntr-quantum

wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.

xarray-regrid

An xarray plugin that adds regridding utilities for datasets and dataarrays.

Xenon Docker images

For your testing needs a collection of Docker images with different file systems and batch schedulers.

X-LAB Plotting Manager

The X-LAB Plotting Manager is a modular framework for turning raw data into plots. It offers a structured, scalable alternative. By enforcing modular components with clear responsibilities and a configurable UI, it replaces tangled plotting scripts with a robust and reproducible analysis pipeline.

xNoise

XrayTIFF2h5

This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.

yatiml

Python library for YAML type inference, schema checking and syntactic sugar.

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.