All software

Winnow

Confidence control and FDR estimation for de novo peptide sequencing

wntr-quantum

wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.

xarray-regrid

An xarray plugin that adds regridding utilities for datasets and dataarrays.

Xenon Docker images

For your testing needs a collection of Docker images with different file systems and batch schedulers.

X-LAB Plotting Manager

The X-LAB Plotting Manager is a modular framework for turning raw data into plots. It offers a structured, scalable alternative. By enforcing modular components with clear responsibilities and a configurable UI, it replaces tangled plotting scripts with a robust and reproducible analysis pipeline.

xNoise

XrayTIFF2h5

This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.

yatiml

Python library for YAML type inference, schema checking and syntactic sugar.

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

zampy

Tool for downloading Land Surface Model input data

Zeeschuimer

Zeeschuimer is a browser extension that monitors traffic while browsing social media, and collects seen posts/items for later systematic analysis. Its target audience is researchers who study content on social media platforms that resist conventional scraping or API-based data collection.

Zero-Entropy Lab

Standard-library research laboratory for deterministic state, evidence, reliability boundaries, agent action integrity, reproducible ledgers, and edge-native execution