All software
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- ANTLR
- Batchfile
- HTML
- + 8
Orange Hackathon
Orange modules for text processing in the project What Works When for Whom
- CSS
- Jupyter Notebook
- Python
- + 2
PinPath
PinPath is an R package and web-based application for visualizing omics data, such as genomics, transcriptomics, proteomics, and metabolomics, onto pathway diagrams from WikiPathways, KEGG, and custom GPML/KGML files.
- bioinformatics
- KEGG
- Omics
- + 2
- HTML
- R
rcoins
Identify continuous lines in a spatial network.
- geospatial
- Networks
- R
- Python
- R
rcrisp Shiny app
Shiny web app for the rcrisp software package.
- geospatial
- R
- shiny
- + 1
- R
Remote BMI
Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API
- Basic Model Interface
- BMI
- julia
- + 4
- Batchfile
- Dockerfile
- Julia
- + 3
rspacer
rspacer is an R package that wraps the RSpace Electronic Lab Notebook (https://www.researchspace.com/) API. It provides convenience functions to browse, search, create, and edit your RSpace documents. In addition, it enables filling RSpace templates using R Markdown/Quarto reports or tabular data.
- Electronic Lab Notebook
- FAIR
- research data management
- + 1
- HTML
- R
RTEMIS
Advanced Machine Learning and Visualization
- Artificial Intelligence
- Just
- Python
- R
- + 1
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- R
SigmaCV
Auto-generates clean, customizable academic CVs from open research data (OpenAlex, ORCID, Crossref, DataCite, Open Editors Plus) — free for individuals, open-source, FAIR by design.
- academic CV
- bibliometrics
- CSL
- + 6
- CSS
- Dockerfile
- JavaScript
- + 5
StratPal
R package for modeling pipelines in stratigraphic paleobiology
- Palaeontology
- Paleobiology
- Paleontology
- + 2
- R
visor
The goal of visor is to provide a set of tools for visibility analysis.
- geospatial
- gis
- isovist
- + 1
- R