All software
check-deps
This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.
- Dependency Hell
- python
- Workflow technologies
- Awk
- CSS
- Makefile
- + 1
ClinDIG
ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.
- clinical
- federated
- genomics
- + 1
- CSS
- Dockerfile
- Go Template
- + 5
clumpedr
Clumpedr aims to facilitate analysis of clumped isotope data. It builds on isoreader which is used to import raw data files from the mass spectrometer, and most of the important data processing parts are based on Huntington et al. 2009 and Daëron et al. 2016.
- Data Analysis
- mass spectrometry
- Makefile
- R
- Rez
Compas Toolkit
The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.
- GPU
- High performance computing
- MRI
- C
- C++
- CMake
- + 4
cwltool
The reference implementation of the Common Workflow Language standards
- CommonWL
- CWL
- SciWorkflows
- Common Workflow Language
- Dockerfile
- JavaScript
- + 4
duckdb-mmcif
Read/write protein structure mmCIF files using SQL with DuckDB
- Data
- Data Analysis
- Optimized data handling
- C++
- CMake
- Makefile
- + 2
Gammapy: Python toolbox for gamma-ray astronomy
Gammapy analyzes gamma-ray data and creates sky images, spectra and lightcurves, from event lists and instrument response information; it can also determine the position, morphology and spectra of gamma-ray sources. It is used to analyze data from H.E.S.S., Fermi-LAT, HAWC, and the Cherenkov Tele...
- astronomy
- Data Analysis
- Gamma-rays
- Cython
- Makefile
- Python
R3BRoot
Software for simulations and data analysis of Reactions with Relativistic Radioactive Beams (R3B) experiments at GSI/FAIR
- cmake
- c-plus-plus
- Data Analysis
- + 13
- C
- C++
- CMake
- + 5
SKAO Science Data Challenge 1 Solution Workflow
The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images. Here we present an environment and workflow for producing a solution to this challenge that can easil...
- astronomy
- Data
- Machine learning
- + 2
- Dockerfile
- Jupyter Notebook
- Makefile
- + 2
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- Makefile
- Python
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Makefile
- Python
GATE
GATE is open source, based on Geant4, and developed by the international OpenGATE collaboration
- Treatment Planning and dosimetry
- C
- C++
- CMake
- + 2