All software
NanopubJL
JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook
- Inter-operability & linked data
- CSS
- Dockerfile
- JavaScript
- + 3
nedextract
nedextract is a python library that helps you to extract information on person names and organisations mentioned in Dutch (annual report) PDF files.
- Jupyter Notebook
- Python
- Shell
NeuralBloch
Neural network surrogate model for Bloch simulations in MR-STAT
- MRI
- PyTorch
- Surrogate model
- Julia
- Python
NeuroGym
NeuroGym is a curated collection of neuroscience tasks with a common interface. The goal is to facilitate the training of neural network models on neuroscience tasks.
- deep learning
- Machine learning
- Neuroscience
- + 3
- Python
nnU-Net
nnU-Net is a semantic segmentation method that automatically adapts to a given dataset. It will analyze the provided training cases and automatically configure a matching U-Net-based segmentation pipeline.
- Artificial Intelligence
- Python
- Shell
Noodle Biomedical Literature Discovery
Public, read-only biomedical literature search, publication inspection, and bounded citation and semantic graph traversal through a hosted MCP server.
- bioinformatics
- biomedical literature
- citation graph
- + 5
- Dockerfile
- Jupyter Notebook
- Python
- + 1
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- C
- CSS
- Go Template
- + 10
OMG Dosimetry
A Python package for performing dosimetry calculations and quality assurance tests. Provides a simple API for common dosimetry tasks.
- Quality Assurance
- Batchfile
- Python
One button compute
Web application for running a CWL workflow on a bunch of files.
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- HTML
- Python
OnkoDICOM
Cross-platform. Provides DVH output, clinical data capture (radiomics), Pyradiomics output, anonymization, ROI manipulation.
- Imaging and Image Processing
- Python
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
Open Matrices Stimulus Set (omss)
omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.
- Intelligence
- Matrices
- python
- + 1
- Python