All software
PlatiPy
Aims to simplify use, visualization, processing, and analysis of medical images. Built on SimpleITK, VTK.
- Imaging and Image Processing
- CSS
- Dockerfile
- HTML
- + 4
PortPy
PortPy, short for Planning and Optimization for Radiation Therapy, is an initiative aimed at creating an open-source Python library for cancer radiotherapy treatment planning optimization.
- Treatment Planning and dosimetry
- CSS
- Python
prfmodel
A modern Python implementation for population receptive field modelling.
- GPU
- neuroimaging
- Neuroscience
- + 2
- Python
protein-detective
Python package to detect proteins in EM density maps.
- Python
PSRDADA python
If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.
- Cython
- Makefile
- Python
pyanno4RT
pyanno4rt is a Python package for conventional and outcome prediction model-based inverse photon and proton treatment plan optimization, including radiobiological and machine learning (ML) models for tumor control probability (TCP) and normal tissue complication probability (NTCP).
- Treatment Planning and dosimetry
- Python
pybacting
Python wrapper around Bacting.
- Biology
- Chemistry
- python
- Just
- Python
PyBeam-QA
A Python library for performing beam quality assurance tests in radiotherapy. The software is in an early stage of development.
- Quality Assurance
- HTML
- JavaScript
- Python
- + 1
pyCERR
pyCERR provides convenient data structure for imaging metadata and their associations. Utilities are provided to to extract, transform, organize metadata and visualize results of image processing for image and dosimetry features, image processing for AI model training and inference.
- Treatment Planning and dosimetry
- Jupyter Notebook
- Python
- Shell
Pycoeus
Pycoeus is a command-line tool and python package designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.
- deep learning
- gis
- Machine learning
- + 2
- Python
Pydicer
Eases conversion of Radiotherapy DICOM data to research-ready format (NIfTI). Provides analysis functionality.
- Imaging and Image Processing
- Makefile
- Python
- Shell
pydicom
Reads, modifies, and writes DICOM data in a "pythonic" way. General-purpose framework, does not handle specifics of individual SOP classes.
- Software Engineering and Data Infrastructure
- Makefile
- Python
- Shell