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Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

Dependency Hell
python
Workflow technologies

Python
CSS
Awk
+ 1

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Python
Shell
Smarty
+ 5

Compas Toolkit

The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.

GPU
High performance computing
MRI

Cuda
C++
Julia
+ 4

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4

Experiment Launcher

Generate and launch Jupyter notebooks for your users.

Workflow technologies

Python
Makefile

FAIR Data Point Client

fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.

Python
Makefile

GraphvizDotLang.jl

Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.

Graphs
Julia Package
Visualization

Julia
Makefile

holodev

A command-line tool written in shell script to simplify the creation of LXC Linux containers.

Shell
Makefile

HORTON

HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.

electronic structure theory
quantum chemistry

Python
C++
Cython
+ 6

I-EMIC

An Implicit Earth system Model of Intermediate Complexity

ESM
oceanography

Fortran
C
C++
+ 6

Kernel Launcher

Dynamically compile GPU kernels and launch them easily and safely using C++ magic. Tight integration with Kernel Tuner results in blazing fast CUDA code that is maintainable and performance portable.

auto-tuning
CUDA
GPU
+ 2

C++
Python
CMake
+ 3