All software
NeuroGym
NeuroGym is a curated collection of neuroscience tasks with a common interface. The goal is to facilitate the training of neural network models on neuroscience tasks.
- deep learning
- Machine learning
- Neuroscience
- + 3
- Python
nnU-Net
nnU-Net is a semantic segmentation method that automatically adapts to a given dataset. It will analyze the provided training cases and automatically configure a matching U-Net-based segmentation pipeline.
- Artificial Intelligence
- Python
- Shell
Noodle Biomedical Literature Discovery
Public, read-only biomedical literature search, publication inspection, and bounded citation and semantic graph traversal through a hosted MCP server.
- bioinformatics
- biomedical literature
- citation graph
- + 5
- Dockerfile
- Jupyter Notebook
- Python
- + 1
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- C
- CSS
- Go Template
- + 10
OMG Dosimetry
A Python package for performing dosimetry calculations and quality assurance tests. Provides a simple API for common dosimetry tasks.
- Quality Assurance
- Batchfile
- Python
One button compute
Web application for running a CWL workflow on a bunch of files.
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- HTML
- Python
OnkoDICOM
Cross-platform. Provides DVH output, clinical data capture (radiomics), Pyradiomics output, anonymization, ROI manipulation.
- Imaging and Image Processing
- Python
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
Open Matrices Stimulus Set (omss)
omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.
- Intelligence
- Matrices
- python
- + 1
- Python
OpenTPS
OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy.
- Treatment Planning and dosimetry
- C
- C++
- Cuda
- + 2
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
Orange3 Argument Mining Add-on
This open-source Python package facilitates the processing, analysis, and visualization of argument corpora. Additionally, It offers user-friendly GUIs integrated into the Orange3 scientific workflow platform, enabling non-programmers to utilize its capabilities.
- Argument mining
- Natural Language Processing
- python
- + 1
- Python