All software
Rucio deployment for KM3NeT
This repository contains the Rucio deployment for KM3NeT. It can be used as an example of how to deploy Rucio.
- Big data
- High performance computing
SalientDescriptor-matlab
If you need to automate your image matching tasks for the purposes of object detection or photo-identification in an easy way, the SalientDescriptor-matlab is right for you
- Image processing
- (HTML)
- (MATLAB)
SARXarray
An Xarray extension to process coregistered Single Look Complex (SLC) image stacks acquired by Synthetic Aperture Radar (SAR).
- Dask
- InSAR
- Interferometry
- + 6
- (Python)
- (ReScript)
- (TeX)
scriptcwl
Create CWL workflows by writing a simple Python script.
- CWL
- Workflow technologies
- ("Common Workflow Language")
- (Python)
self-hosted runners
Collection of resources to set up GitHub runners on self-hosted infrastructure
- High performance computing
- (Dockerfile)
- (Shell)
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- (Batchfile)
- (C)
- (C++)
- + 9
sirup
Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.
- ip-rotation
- openvpn
- python
- + 1
- (Python)
- (Shell)
SlicerIGT
Software toolkit for rapid development of image-guided therapy systems - for minimally invasive medical procedures, where operators rely on computer-generated images rather than direct sight of the target organs.
- 3D Slicer
- deep learning
- Medical image computing
- + 2
- (C++)
- (CMake)
- (Python)
snakemake-wrf
A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.
- geospatial
- High performance computing
- python
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
TaxoTagger
DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- (Makefile)
- (Mustache)
- (Python)
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- (Batchfile)
- (C++)
- (CSS)
- + 19
ValidSense
The ValidSense toolbox aims to assess the agreement between two quantitative methods using the Limits of Agreement analysis, aka the Bland-Altman analysis. Four existing variants are available. Moreover, a Longitudinal analysis is developed to assess agreement over time.
- Agreement Analysis
- Bland-Altman
- Limits of Agreement
- + 1
- (Python)