All software
OBiBa Agate
Agate is a web application that offers users related services to the OBiBa software stack.
- authentication
- Epidemiology
- Batchfile
- Fluent
- FreeMarker
- + 8
OBiBa Mica
Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.
- euCanSHare, software integration
- Batchfile
- CSS
- FreeMarker
- + 7
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- ANTLR
- Batchfile
- HTML
- + 8
OMG Dosimetry
A Python package for performing dosimetry calculations and quality assurance tests. Provides a simple API for common dosimetry tasks.
- Quality Assurance
- Batchfile
- Python
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
OpenRefine
OpenRefine is a powerful free, open source tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
- Data Analysis
- Data Science
- Batchfile
- CSS
- HTML
- + 7
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- Batchfile
- Dockerfile
- Go
- + 7
ParticlePhaseSpace
A set of tools for processing and analysing particle phase space files. Designed for use with Monte Carlo simulations, particularly for proton therapy.
- Treatment Planning and dosimetry
- Batchfile
- Jupyter Notebook
- Makefile
- + 1
PyRadiomics
PyRadiomics is an open-source python package for the extraction of Radiomics features from medical imaging
- Imaging and Image Processing
- Batchfile
- C
- CMake
- + 4
PyXenon
Python wrapper for the Xenon programming interface to various compute and storage resources.
- Batchfile
- Python
- Shell
Remote BMI
Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API
- Basic Model Interface
- BMI
- julia
- + 4
- Batchfile
- Dockerfile
- Julia
- + 3