Software | Research Software Directory

reference_set_selection_benchmark

Code underlying the publication: "Benchmarking the impact of reference genome selection on taxonomic profiling accuracy"

Genome Selection
Lineage Abundance Estimation
Sequence Clustering
+ 2

Jupyter Notebook
Markdown
Other
+ 3

3

1

Software accompanying the publication: Surrogate DC Microgrid Models for Optimization of Charging Electric Vehicles under Partial Observability

DC microgrid
Electric vehicles (EV),
Optimization Algorithms

3

1

Software supporting the article: Community Detection for Temporal Weighted Bipartite Networks

Bipartite Network
Bipartite Networks
Community Detection
+ 4

Jupyter Notebook
Markdown
Other
+ 1

4

1

Soil suitability maps for agriculture for the province Noord-Brabant (Netherlands) created with WaterVissionAgriculture and scripts to generate input data and to run the model WWL-tabel

Agriculture
crop production
soil suitability
+ 2

2

1

Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus

dental calculus
Fourier-transform infrared spectroscopy (FTIR)
metagenomics
+ 2

5

1

supervised-learning-pwa-mpc

Software underlying the publication: Learning-based model predictive control for piecewise affine systems with feasibility guarantees

Feasibility
Hybrid Systems
Machine learning
+ 1

Markdown
Matlab
Other
+ 1

1

Analizo

Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.

Software Evolution
Source Code Metrics
Static Analysis

C
C#
C++
+ 7

2

1

anonymoUUs

Python package to replace identifiable strings in multiple files and folders at once

de-identification
python
text

Jupyter Notebook
Python

3

1

Baklava

Deploys a Kubernetes cluster and big data services on the cloud.

Big data
High performance computing
Optimized data handling

Dockerfile
HCL
Python
+ 2

1

BenchmarkRecovery

This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.

R

2

1

BestieTemplate.jl

BestieTemplate.jl is a template focused on best practices for package development in Julia.

best practices
julia
template

Julia
Python

9

1

BIRCH

BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.

bioinformatics
BLAST
genomics
+ 3

1