All software
3D Slicer
3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.
- 3D
- 3DSlicer
- Extension
- + 7
- C
- C++
- CMake
- + 6
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
- modulated excitation
- SMLM
- Super-Resolution Microscopy
- + 2
- C
- C#
- C++
- + 7
RoIPoly
Source code for “RoIPoly: Vectorized Building Outline Extraction Using Vertex and Logit Embeddings”
- aerial imagery
- building footprint extraction
- instance segmentation
- + 4
- C
- C++
- Markdown
- + 4
Source code for INCS (Iterative Nonlinear Contrast Source)
Source code for INCS (Iterative Nonlinear Contrast Source)
- INCS
- medical ultrasound
- microbubbles
- + 1
- Automake
- C
- Fortran
- + 5
PowerSensor3
PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.
- GPU
- High performance computing
- C
- C++
- CMake
- + 3
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- C
- R
mason_constitutive_model
MASON (Masonry Advanced Softening cONtact) source code
- cyclicity
- distinct element method
- explicit integration scheme
- + 3
- C
- C++
- Markdown
- + 1
eAstroViz
This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.
- LOFAR
- radio astronomy
- RFI
- C
- C++
- Cuda
- + 3
LUE
LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.
- Agent-based modeling
- environmental modelling
- field based modelling
- + 6
- Batchfile
- C
- C++
- + 6
WEARDA
WEARDA: recording wearable sensor data for human activity monitoring.
- embedded software
- GPS
- Human activity monitoring
- + 4
- C
- TeX
Entangled
Entangled makes literate programming easier. It keeps markdown and program source in sync. This makes it more convenient to extend and debug your literate code.
- Literate Programming
- open science
- python
- + 2
- C
- C++
- Jinja
- + 3
SlicerRT
SlicerRT allows users to analyze spatio-temporal accumulation of the therapeutic dosage (radiation, thermal, etc.). Tools include dose visualization, quantitative metrics computation, comparison, and import/export to DICOM format.
- C
- C++
- CMake
- + 1