All software

1009-1056 of 1324

GraphvizDotLang.jl

Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.

Graphs
Julia Package
Visualization

(Julia)
(Makefile)

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

Multi-scale & multi model simulations

(C++)
(CMake)
(Dockerfile)
+ 5

H2 scenario explorer

Web application to visualize hydrogen production scenarios as part of HyChain WP1

energy transition
renewable energy
Visualization

(HTML)
(JavaScript)
(Shell)

H2 scenario preprocessing

Preprocessing script to create a database for the H2 scenario explorer

Data processing
energy transition
renewable energy

("Jupyter Notebook")
(Python)

Components for Haddock3 analysis

React components used by analyse command of haddock3 and haddock3 web application.

(CSS)
(HTML)
(JavaScript)
+ 1

haddock3-ui

The haddock3 web application had several components that could be used outside of the web application. This software contains those components.

(CSS)
(HTML)
(JavaScript)
+ 2

Hadrianus scripts

Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.

Inter-operability & linked data

(Perl)
(Python)
(Shell)

Harmony

Making harmonisation simple. Social scientists often have to compare items from different questionnaires or datasets. Harmony is a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items quickly, even in different languages.

AI
Data
Data Science
+ 10

(Dockerfile)
("Jupyter Notebook")
(Python)

YODA

YODA is a lightweight C++ and Python library for histogramming and statistical analysis, designed for use in particle physics workflows. It supports reproducible, high-performance data analysis and is the foundation for data handling in tools like Rivet.

Data Analysis
High performance computing
Statistics
+ 1

(C++)
(M4)
(Prolog)
+ 2

HERA_CAL_QUANTUM

Radioastronomy calibration pipeline of the HERA telescope ported on quantum computers

calibration
python
Quantum Computing
+ 1

("Jupyter Notebook")
(Python)
(Shell)

H-gear

This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.

American Revolution
semi-supervised topic modeling
social network analysis
+ 2

(Batchfile)
(Python)
(R)

hhl-prototype

The HHL prototype allows to use the HHL algorithm to solve linear system of equations

Numerical analysis
Quantum Computing

(Python)

holodev

A command-line tool written in shell script to simplify the creation of LXC Linux containers.

(Makefile)
(Shell)

HORTON

HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.

electronic structure theory
quantum chemistry

(Assembly)
(BitBake)
(C)
+ 6

HPGEM

hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.

Finite Element
High performance computing

(C)
(C++)
(CMake)
+ 6

htr-quality-classifier

A package to determine the quality of a a digitized text, from a handwritten script or scanned print (HTR/OCR output).

Machine learning
python
Text analysis & natural language processing

("Jupyter Notebook")
(Python)
(Shell)

iBridges

A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.

Data management
iRODS
Metadata Management
+ 1

(Dockerfile)
("Jupyter Notebook")
(Python)
+ 2

iBridges-GUI

A graphical user interface to iRODS employing the iBridges python package.

Data management
Graphical user interface
iRODS
+ 1

(CSS)
(Python)

ICD_GEMs.jl

A Julia package that allows to translate ICD-9 into ICD-10 codes and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

CDC
Clinical Data
Coding Scheme
+ 12

(Julia)

ICGC ARGO

Harmonising world-wide efforts to reduce the global burden of cancer

Cancer Genomics
Data portal

ICOS CP python library

This package, available at pip as icoscp, allows you to have direct access to data objects from the ICOS Carbon Portal where a "Preview" is available. It provides easy access to data objects hosted at the ICOS Carbon Portal. By using this library you can load data files directly into memory.

Big data
Data Analysis
python
+ 2

(Just)
(Python)

ICOS data repository

The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.

Data
Inter-operability & linked data
metadata
+ 3

(HTML)
(Java)
(JavaScript)
+ 3

I-EMIC

An Implicit Earth system Model of Intermediate Complexity

ESM
oceanography

(C)
(C++)
(CMake)
+ 6

iEnvironment

iEnvironment is a web-based, extensible and distributed data management platform and user gateway for integrated environmental monitoring and modelling (IEMM).

Benthic Macroinvertebrates
Channel Morphology
Channel Stability
+ 8

IMAGE-LAND-LUE

This is a free and open source software (FOSS) Python version of the simulation model IMAGE-land, the land cover change model from the IMAGE 3.1 Integrated Assessment Model (IAM). Most, but not all, capabilities of the original model are included.

geospatial
integrated assessment model
land use change
+ 2

(Python)

imas2xarray

Imas2xarray is a python library for reading IMAS data in hdf5 format into xarray.

fusion-reactor
hdf5
python
+ 1

("Jupyter Notebook")
(Python)
(Shell)

INA tool

A tool for visualising and analysing Institutional Statements

Multilayer Networks
Visualization

(CSS)
(HTML)
(JavaScript)
+ 1

infra-stemmus-scope

Set-up and run STEMMUS-SCOPE on SURF research cloud (SRC)

Workflow technologies

Internet Archive scraper

The Internet Archive scraper is a workflow for collecting webpages archived in Internet Archive's Wayback Machine. It is designed to run serverless on Amazon's AWS infrastructure.

AWS
Internet Archive
python
+ 2

(HCL)
(Python)
(Shell)

Introduction to deep learning lesson

This lesson gives an introduction to deep learning.

deep learning
lesson
python

("Jupyter Notebook")
(Makefile)
(Python)
+ 1

IPOPT

Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.

Software Engineering and Data Infrastructure

(AMPL)
("BibTeX Style")
(C)
+ 12

Islandora

Islandora is an open-source software framework designed to help institutions and organizations and their audiences collaboratively manage, and discover digital assets using a best-practices framework.

Drupal
Fedora
open source
+ 1

(CSS)
(JavaScript)
(PHP)
+ 1

i-VRESSE jupyterlab haddock3 configurator

Jupter Lab extension to create/edit haddock3 configuration file.

Inter-operability & linked data

(CSS)
(JavaScript)
(Python)
+ 1

jaspKinematics

A trajectory analyzer for JASP

Biology
kinematics
Physics

(QML)
(R)

JASP modules app

A web application that allows you to search/filter all the available JASP modules and install them.

(CSS)
(HTML)
(TypeScript)

jaspModuleTemplate

Template to create a JASP module.

Data Analysis
Statistics

(QML)
(R)

jQUDT

Java Library to deal with QUDT units and conversions between them. QUDT is an ontology for "Quantities, Units, Dimensions and Data Types in OWL and XML"

Inter-operability & linked data
Java

JUBE

JUBE is a generic, lightweight, configurable environment to run, monitor and analyse application execution in a systematic way. This software is commonly used to execute benchmarks and complex workflows on High Performance Computers, but is not limited to these systems.

Benchmarking
High performance computing
HPC
+ 4

(C)
(Python)
(Shell)

JulianA

Accelerates proton radiotherapy research. Flexible, modular toolkit.

Treatment Planning and dosimetry

(Julia)
("Jupyter Notebook")
(Shell)

JupyterDaskOnSLURM

A Dask cluster and a Jupyter server on a SLURM system

Big data
High performance computing
jupyter notebooks
+ 1

(Python)
(Shell)

JupyterLab dataset browser for THREDDS

A browser that allows you to include NetCDF data stored in THREDDS catalog into a Jupyter Notebook.

Big data
Optimized data handling

(CSS)
(JavaScript)
("Jupyter Notebook")
+ 2

JURI

JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.

(CSS)
(Handlebars)
(HTML)
+ 5

Kernel Float

C++ Header-only library for CUDA that simplifies working with vector types and reduced precision floating-point arithmetic in GPU code.

AI
Big data
GPU
+ 1

(C)
(C++)
(CMake)
+ 3

Containers for the KM3NeT Rucio deployment

This repository contains configuration files and scripts to build KM3NeT-specific container images used to deploy Rucio for KM3NeT.

Big data
High performance computing

KMM

KMM is a lightweight C++ middleware for accelerated computing.

GPU
High performance computing

(C++)
(CMake)
(Cuda)
+ 1

kunefe

A Python package that helps users run containerized applications on HPC systems

Agent-based modeling
Apptainer
containers
+ 5

(Dockerfile)
(Python)
(Shell)

LARA Lab Automation

Open source toolset for lab automation

laboratory automatization

(CSS)
(Dockerfile)
(HTML)
+ 5

Laserfarm

Laserfarm: Laserchicken Framework for Applications in Research in Macroecology. Leverage Laserchicken in distributed fashion to use continental scale point cloud datasets for research.

(Dockerfile)
("Jupyter Notebook")
(Python)