All software
Research Lifecycle Approach using Islandora
Islandora 8 is an open-source software framework designed to help organizations collaboratively manage and discover digital assets using a best-practices, standards-based preservation framework.
Research Portal for Secure Data Discovery, Access, and Collaboration
A Research Portal that can address these different usage models, while serving as website and gateway for authorized researchers to capture, query, and visualize patient data; communicate, collaborate and share datasets; and access support and training resources. platforms.
- Collaboration
- Data Access Request
- Data Sharing
- + 3
RESTful APE
RESTful API for the APE (Automated Pipeline Explorer) library.
- Java
- Program synthesis
- REST API
- + 1
- Java
- Dockerfile
ReSurfEMG
ReSurfEMG is an open source collaborative python library for analysis of respiratory electromyography (EMG). The library includes functions for pre-processing, analysis and machine learning.
- electrophysiology
- EMG
- Machine learning
- + 1
- Jupyter Notebook
- Python
- TeX
- + 3
ReSurfEMG-dashboard
A dashboard for visualizing and analyzing respiratory EMG signal, making use of the ReSurfEMG library
- EMG
- Time Series Analysis
- Visualization
- Python
Review Argumentation at Scale
This package contains a scalable pipeline to perform argument reasoning on a dataset of product reviews, to identify the highest quality ones. By tuning both lossy and lossless parameters, it is possible to tune the pipeline to foster the accuracy of the computation or its speed.
- Python
- Prolog
- Shell
- + 1
RickView
Easy to deploy low-resource stand-alone RDF knowledge graph browser written in Rust. No SPARQL endpoint needed!
- Linked Data
- Linked Data Browser
- RDF
- + 2
- Rust
- HTML
- CSS
- + 1
Rivet
Rivet is a toolkit for validation and analysis of Monte Carlo event generators in particle physics. It provides a library of reusable analysis components and a large collection of published analyses, enabling precise, reproducible comparisons between theory and experimental data.
- Big data
- Collider physics
- Data Analysis
- + 2
- C++
- Gnuplot
- C
- + 2
ROOT
An open-source data analysis framework used by high energy physics and others.
- C++
- C
- JavaScript
- + 27
Rosemary
Rosemary is a plugin for YASGUI (Yet Another SPARQL GUI), facilitating creation of SPARQL queries without requiring knowledge of SPARQL.
- Data
- database
- Data management
- + 10
- JavaScript
- CSS
- HTML
- + 1
rspacer
rspacer is an R package that wraps the RSpace Electronic Lab Notebook (https://www.researchspace.com/) API. It provides convenience functions to browse, search, create, and edit your RSpace documents. In addition, it enables filling RSpace templates using R Markdown/Quarto reports or tabular data.
- Electronic Lab Notebook
- FAIR
- research data management
- + 1
- HTML
- R
Rucio policy package for KM3NeT
Package with custom policies for the Rucio instance of KM3NeT.
- Big data
- Data management
- Python
Satsense
A Python library for land use classification based in satellite images.
- Image processing
- Machine learning
- Jupyter Notebook
- Python
Scholy – Core
This project is part of Scholy, a linked open data platform for realizing directories of scholar.
- Grails
- RDF
- scholar directory
- + 3
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
scikit-talk
Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.
- conversation
- language corpora
- turn-taking
- Python
- Shell
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- R
GitHub action to set up apptainer
GitHub action for setting up apptainer in a Continous Integration job
- High performance computing
- TypeScript
- Shell
- JavaScript
SFINCS-BMI-server
grpc4bmi wrapper around Delteras/sfincs BMI for use with eWaterCycle
- Jupyter Notebook
- C++
- Dockerfile
- + 1
ShareTrait website
Share Trait web application is a web application that allows users to deposit trait data in the Share Trait database.
- Data
- Inter-operability & linked data
- metadata
SkyCoords.jl
Astronomical coordinate systems in Julia
- astronomy
- Astrophysics
- Coordinate systems
- + 1
- Julia
SLURM CLI-API Proxy
SLURM CLI-API Proxy client is a tool designed to bridge existing applications and scripts that rely on the SLURM CLI. The tool mimics traditional SLURM CLI commands, translating them into REST API calls, enabling seamless integration of existing tools with external SLURM workload managers.
- Arvados
- Proxy
- SLURM
- Python
- Shell
- Go
slurm-mongo
A package to download slurm usage from a supercomputer and upload it to MongoDB
- Big data
- High performance computing
- SLURM
- Python
Slurm time on Jupyter
Display Slurm job remaining time in Jupyter top bar
- High performance computing
- jupyter notebooks
- SLURM
- Python
- TypeScript
- JavaScript
- + 1
SmartPlay
Android OS Wear Application to measure children's activity when playing.
- Psychology
- Real time data analysis
- Visualization
- Kotlin
- Svelte
- TypeScript
- + 2
SMP decision tree
SMP decision tree is a questionnaire for creating a Software Management Plan (SMP).
- metadata
- Project management
- software sustainability
- Shell
- Python
snakemake-storage-plugin-rucio
A Snakemake storage plugin that handles files available through [Rucio](https://rucio.cern.ch/).
- rucio
- snakemake
- Python
speckcn2
SpeckleCn2Profiler revolutionizes satellite communication, combining SCIDAR and AI. By accurately estimating turbulence strength and refining signals, it ensures reliable performance in any environment. Dive into our repository and join the quest to transform optical links.
- Scientific machine learning
- Python
- TeX
- Nix
SPEX X-ray spectral fitting package
SPEX is a software package for fitting high-resolution astrophysical X-ray and UV spectra.
- Astrophysics
Springtime
Spatiotemporal phenology research with interpretable models
- geospatial
- Machine learning
- phenology
- Python
- Dockerfile
SSIML2021
Software developed in the project Automation of the Cognitive Mapping Text-analysis Technique
- Machine learning
- Text analysis & natural language processing
- Jupyter Notebook
- Python
STAC2dCache
STAC2dCache is a Python tool to create and manipulate STAC catalogs on a dCache storage system.
- Data
- geospatial
- metadata
- + 2
- Jupyter Notebook
- Python
STEMMUS_SCOPE
Integrated code of SCOPE and STEMMUS
- Jupyter Notebook
- MATLAB
- Python
- + 2
STMtools
Xarray extension for Space-Time Matrix.
- Deformation
- InSAR
- PSI
- + 2
- Jupyter Notebook
- Python
Storyboards
The storyboards application allows you to host a collection of stories using an intuitive layout.
- Visualization
- HTML
- Vue
- JavaScript
StratPal
R package for modeling pipelines in stratigraphic paleobiology
- Palaeontology
- Paleobiology
- Paleontology
- + 2
- R
Streetscapes
Streetscapes is a package for code for downloading, segmenting and analysing images from Mapillary and KartaView.
- deep learning
- geospatial
- Image processing
- + 2
- Jupyter Notebook
- Python
Streetview Segmentation
Perform semantic segmentation on images, using Facebook's Mask2Former models.
- docker
- image recognition
- Machine learning
- + 2
- Python
- Dockerfile
Stroll
Semantic Role labeling for Dutch. Understanding who does what, where, to whom.
- Text analysis & natural language processing
- Python
- Shell
Structure from Motion
Construct 3D pointclouds from a set of 2D images
- Python
- Shell
- MATLAB
- + 2
sv-gen
Highly portable parallel workflow to generate artificial genomes with structural variants.
- Big data
- High performance computing
- Workflow technologies
- Python
- Shell
Swan
Swan is a Python package to create statistical models to predict molecular properties
- Machine learning
- Python
- Jupyter Notebook
TaxoTagger Webapp
Webapp for DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Python
Teachbook recombiner
Web app to pick chapters from a pre-defined list of TeachBooks and combine them into a new book using the new external table of content entry type
- TypeScript
- JavaScript
- CSS
- + 1
test-bitbucket
An entry for testing the connection with a BitBucket repo
the FAIR extension
A web browser extension to evaluate Digital Object FAIRness developed at Maastricht University Library.
- FAIR assessment
- FAIR Digital Objects
- FAIR metrics
- JavaScript
- CSS
- HTML
Tilbot
An open source, open science approach to the design of, and research with conversational agents.
- Text analysis & natural language processing
- Svelte
- JavaScript
- TypeScript
- + 2
Tilburg University Coding Café
Materials for Tilburg University's Coding Café
- community
- learning materials
- presentation
- + 3