All software
SSIML2021
Software developed in the project Automation of the Cognitive Mapping Text-analysis Technique
- Machine learning
- Text analysis & natural language processing
- Jupyter Notebook
- Python
STAC2dCache
STAC2dCache is a Python tool to create and manipulate STAC catalogs on a dCache storage system.
- Data
- geospatial
- metadata
- + 2
- Jupyter Notebook
- Python
STEMMUS_SCOPE
Integrated code of SCOPE and STEMMUS
- Jupyter Notebook
- MATLAB
- Python
- + 2
STMtools
Xarray extension for Space-Time Matrix.
- Deformation
- InSAR
- PSI
- + 2
- Jupyter Notebook
- Python
Storyboards
The storyboards application allows you to host a collection of stories using an intuitive layout.
- Visualization
- HTML
- Vue
- JavaScript
StratPal
R package for modeling pipelines in stratigraphic paleobiology
- Palaeontology
- Paleobiology
- Paleontology
- + 2
- R
Streetscapes
Streetscapes is a package for code for downloading, segmenting and analysing images from Mapillary and KartaView.
- deep learning
- geospatial
- Image processing
- + 2
- Jupyter Notebook
- Python
Streetview Segmentation
Perform semantic segmentation on images, using Facebook's Mask2Former models.
- docker
- image recognition
- Machine learning
- + 2
- Python
- Dockerfile
Stroll
Semantic Role labeling for Dutch. Understanding who does what, where, to whom.
- Text analysis & natural language processing
- Python
- Shell
Structure from Motion
Construct 3D pointclouds from a set of 2D images
- Python
- Shell
- MATLAB
- + 2
sv-gen
Highly portable parallel workflow to generate artificial genomes with structural variants.
- Big data
- High performance computing
- Workflow technologies
- Python
- Shell
Swan
Swan is a Python package to create statistical models to predict molecular properties
- Machine learning
- Python
- Jupyter Notebook
TaxoTagger Webapp
Webapp for DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Python
Teachbook recombiner
Web app to pick chapters from a pre-defined list of TeachBooks and combine them into a new book using the new external table of content entry type
- TypeScript
- JavaScript
- CSS
- + 1
test-bitbucket
An entry for testing the connection with a BitBucket repo
the FAIR extension
A web browser extension to evaluate Digital Object FAIRness developed at Maastricht University Library.
- FAIR assessment
- FAIR Digital Objects
- FAIR metrics
- JavaScript
- CSS
- HTML
Tilbot
An open source, open science approach to the design of, and research with conversational agents.
- Text analysis & natural language processing
- Svelte
- JavaScript
- TypeScript
- + 2
Tilburg University Coding Café
Materials for Tilburg University's Coding Café
- community
- learning materials
- presentation
- + 3
Tissue Simulation Toolkit
Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.
- Cellular Potts Model
- Chemotaxis
- Embryology
- + 1
- C++
- Python
- Cuda
- + 5
trex2champ
trex2champ is a tool that allows reading output files of quantum chemistry codes (GAMESS and trexio files) and writing input files for CHAMP in V3.0 format.
- Inter-operability & linked data
- python
- Python
Trustchain
Trustchain is a decentralized approach to public key infrastructure designed for application to digital identity. Based on the W3C standards for decentralized identifiers (DID) and verifiable credentials (VC), it enables the creation of chains of trustworthy DIDs between recognizable legal entities.
- Decentralized public key infrastructure
- Digital identity
- Verifiable credentials
- Rust
- CSS
- HTML
- + 1
tsdf
A package to read, modify and write TSDF data in Python.
- Time Series
- Python
- TeX
TulipaClustering.jl
Cluster profiles into representative periods.
- Clustering
- Energy system analysis
- Energy system modelling
- + 1
- Julia
TulipaIO.jl
This package relies on DuckDB to tie a variety of data sources with Julia, and TulipaEnergyModel (TEM). It also enables a bidirectional capability to manipulate datasets from Julia and back to DuckDB.
- Julia
- EdgeQL
Tweet_collector
This project is aimed to help researchers to use Academic Research product track to collect tweets of their interest and analyze them.
- collect tweet
- python
- search tweet
- + 1
- Python
UFEMISM2.0
The successor of UFEMISM, has all of its features (and more?), but is based on the distributed architecture introduced in minimism.
- Finite volume method
- ice sheet
- MPI
- + 1
- Fortran
- MATLAB
- Python
- + 5
Unraphael
Unraphael is a computer vision tool for art history, designed to support the analysis of figure-outline similarities in images to study Renaissance copying practices. Its user-friendly interface lets researchers inspect structural patterns, revealing insights into artistic techniques.
- computational art analysis
- computer vision
- Image preprocessing
- + 3
- Python
- Dockerfile
- CSS
UnrollingAverages.jl
A Julia package to deconvolve simple moving averages of time series.
- Data Analysis
- Data Science
- Deconvolution
- + 6
- Julia
UNSAT3D
Soil health is essential for infrastructure and plant growth. The UNSAT project aims to improve 3D soil image processing using machine learning and high-fidelity simulation data to study water transport and root-soil interactions during maize growth.
- Data Analysis
- Machine learning
- Python
- Shell
User-Defined Oceanographic Data Products
Allows researchers to access Oceans2.0 data products programmatically and also enable researchers to define, test, use and share processing code for user-defined data products in a custom-designed programming environment.
- oceanography
- Oceans
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.
- federated learning
- Java
- privacy preservation
- + 3
- Jupyter Notebook
- Python
- Java
- + 4
Virtual Health Gateway
The Virtual Health Gateway is a platform that facilitates direct, consistent, and standardized capture of diverse data types from research study participants in real-world settings.
- Data
- Data management
- Data Sharing
- + 4
Virus Seq
The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.
- COVID-19
- Data portal
- genomics
- + 1
- TypeScript
- JavaScript
- HTML
- + 2
visor
The goal of visor is to provide a set of tools for visibility analysis.
- geospatial
- gis
- isovist
- + 1
- R
votca-xtp
VOTCA-XTP is a library which allows you to calculate the electronic properties of organic materials
- High performance computing
vqls-prototype
Variational Quantum Linear Solver Library.
- Numerical analysis
- Quantum Computing
- Python
Web-enabled Awareness Research Network (WARN)
Web-enabled Awareness Research Network - Earthquake and Tsunami detection.
- earthquake
- Oceans
- tsunami
wntr-quantum
wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.
- Quantum Computing
- Water Distribution Networks
- Python
- Shell
xarray-regrid
An xarray plugin that adds regridding utilities for datasets and dataarrays.
- geospatial
- python
- xarray
- Python
Xenon Docker images
For your testing needs a collection of Docker images with different file systems and batch schedulers.
- High performance computing
- Workflow technologies
- Shell
- Dockerfile
- Roff
- + 4
XrayTIFF2h5
This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.
- Optimized data handling
- Workflows
- Python
- Makefile
yatiml
Python library for YAML type inference, schema checking and syntactic sugar.
- Python
- Shell
Yoda
A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.
- HTML
- Jinja
- Python
- + 5
zampy
Tool for downloading Land Surface Model input data
- Data
- Data management
- Workflow technologies
- Python
ZarrVis (Ruisdael)
Zarr files visualizer for the web. Ruisdael observatory (TU Delft)
- Svelte
- TypeScript
- JavaScript
- + 4
Zeeschuimer
Zeeschuimer is a browser extension that monitors traffic while browsing social media, and collects seen posts/items for later systematic analysis. Its target audience is researchers who study content on social media platforms that resist conventional scraping or API-based data collection.
- Browser Extension
- Social media
- + 3
- JavaScript
- HTML
- Python
- + 2