All software
ArrayAnalysis
ArrayAnalysis provides a user-friendly solution for transcriptomic data analysis. It allows researchers, regardless of their bioinformatics expertise, to efficiently analyse, explore, and interpret RNA sequencing and microarray datasets.
- Data Analysis
- data visualization
- microarray
- + 2
- Batchfile
- HTML
- Inno Setup
- + 2
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
- Building
- Point Cloud
- Surface-reconstruction
- + 1
- Automake
- C
- C++
- + 8
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- CSS
- Dockerfile
- HTML
- + 3
DeepRank
Deep learning framework for data mining protein-protein interactions using CNN
- Big data
- Machine learning
- Optimized data handling
- C
- Makefile
- Python
- + 2
GrainLearning
Unsure about the parameters of your grains in a computer simulation? Use Iterative Bayesian Filtering to learn parameter distributions from limited data. Is your model running slowly? Speed up your simulations with machine-learning surrogates. All these features are integrated within GrainLearning.
- Bayesian Inference
- Data assimilation
- Machine learning
- + 2
- Jupyter Notebook
- PureBasic
- Python
- + 1
TraP: The LOFAR Transients Pipeline
The LOFAR Transients Pipeline (or "TraP") is a Python and SQL based system for detecting and responding to transient and variable sources in a stream of astronomical images.
- Image processing
- radio astronomy
- Source association
- + 3
- Mako
- PLpgSQL
- Python
- + 1
CHI2023_DKE
User Interaction Dataset for CHI 2023 paper "Knowing About Knowing: An Illusion of Human Competence Can Hinder Appropriate Reliance on AI Systems."
- Appropriate Reliance
- DunningKruger Effect
- Human-AI Decision Making
- + 1
- large-text-file
- Markdown
- Other
- + 2
PROTEUS
PROTEUS is a Python framework that simulates the coupled evolution of the atmospheres and interiors of rocky planets.
- Exoplanets
- model coupling
- Julia
- Jupyter Notebook
- Python
- + 2
grlc
Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.
- garlic
- Inter-operability & linked data
- CSS
- Dockerfile
- HTML
- + 4
Twiqs
Software behind the web server twiqs.nl, which has provided free access to statistics about Dutch tweets since 2010
- Big data
- Text analysis & natural language processing
- Visualization
- HTML
- Java
- JavaScript
- + 3
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- C
- Cuda
- Dockerfile
- + 3
QMflows
Construction and efficient execution of computational chemistry workflows.
- Multi-scale & multi model simulations
- Workflow technologies
- Jupyter Notebook
- Python
- Shell