All software
PinPath
PinPath is an R package and web-based application for visualizing omics data, such as genomics, transcriptomics, proteomics, and metabolomics, onto pathway diagrams from WikiPathways, KEGG, and custom GPML/KGML files.
- bioinformatics
- KEGG
- Omics
- + 2
- HTML
- R
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.
- Data Analysis
- Demographic Analysis
- Geographic Visualization
- + 8
- CSS
- Dockerfile
- HTML
- + 5
PlatiPy
Aims to simplify use, visualization, processing, and analysis of medical images. Built on SimpleITK, VTK.
- Imaging and Image Processing
- CSS
- Dockerfile
- HTML
- + 4
Pure3D
A web platform for exploring 3D digital collections and editions in cultural heritage.
- CSS
- HTML
- JavaScript
- + 5
PyBeam-QA
A Python library for performing beam quality assurance tests in radiotherapy. The software is in an early stage of development.
- Quality Assurance
- HTML
- JavaScript
- Python
- + 1
pyQAserver
A Python-based server for performing Quality Assurance tests. Provides a web interface for managing and running tests.
- Quality Assurance
- CSS
- HTML
- JavaScript
- + 2
QATrack+
QATrack+ is a fully configurable, free, and open source (MIT License) web application for managing QA data for radiation therapy and medical imaging equipment
- Quality Assurance
- CSS
- Dockerfile
- HTML
- + 6
Radiam
Radiam helps researchers keep track of their data, regardless of where it is stored. There are multiple components working together, and most of them run within Docker containers.
- metadata
- RDM
- CSS
- HTML
- JavaScript
- + 3
REE-HDSC
Software developed in the project REE-HDSC (Recognizing Extracted Entities for the Historical Database Suriname Curacao, 2023-2024) of the Radboud University Nijmegen and the Netherlands eScience Center.
- hand-written text recognition
- named entity Recognition
- HTML
- Jupyter Notebook
- Python
Reflective Continuum
Standard-library Python reference for versioned graph storage, SQLite persistence, FTS5 lexical retrieval, bounded graph analysis, entropy metrics, transactional ingestion, and evidence-aware reflection
- graph storage
- lexical retrieval
- pagerank
- + 3
- HTML
- Python
RickView
Easy to deploy low-resource stand-alone RDF knowledge graph browser written in Rust. No SPARQL endpoint needed!
- Linked Data
- Linked Data Browser
- RDF
- + 2
- CSS
- Dockerfile
- HTML
- + 1
ROE
Designed for patient-specific prescription determination using personalized dose-response curves. Visualizes TCP and NTCP.
- Treatment Planning and dosimetry
- AGS Script
- Batchfile
- C
- + 20