All software
LORIS
Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.
- Computational Neuroscience
- database
- neuroimaging
- + 3
- CSS
- GLSL
- Go Template
- + 10
Mahiru
A prototype for a federated, distributed data sharing and processing system.
- Data processing
- Data Sharing
- Policies
- + 1
- C
- Dockerfile
- Makefile
- + 2
MMSODA Toolbox for MATLAB
MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.
- Batchfile
- C
- CSS
- + 5
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Dockerfile
- Go
- Makefile
- + 2
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- Makefile
- Mustache
- Python
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- Batchfile
- C
- C++
- + 14
openPSTD
openPSTD is a Python-based research software that allows efficient and detailed calculation of sound propagation in a 2D built environment. It is especially useful as a reference tool for other developed software on acoustic sound propagation.
- Acoustics
- GPU
- python
- C
- C++
- CMake
- + 3
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- CSS
- HTML
- JavaScript
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Batchfile
- CSS
- HTML
- + 4
Plus Toolkit
Toolkit for data acquisition, pre-processing, calibration, and real-time streaming of imaging, position tracking, and other sensor data for medical applications.
- 3D Slicer
- electromagnetic tracking
- image capture
- + 7
- Batchfile
- C
- C++
- + 2
PoreSpy
PoreSpy is a collection of image analysis tools used to extract information from 3D images of porous materials (typically obtained from X-ray tomography).
- image analysis
- porous media
- tomography
- Batchfile
- Python
- Shell
qumia-train-scripts
Scripts and files related to ML training for the QUMIA project
- Machine learning
- Neuromuscular
- ultrasound imaging
- Jupyter Notebook
- Python
- Shell