All software
3D Slicer
3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.
- 3D
- 3DSlicer
- Extension
- + 7
- C++
- Python
- CMake
- + 5
MagnumPI - Potential Integrator
A package for the calculation of scattering angles and cross sections.
- Inter-operability & linked data
- Visualization
- C++
- Mathematica
- Python
- + 2
mexca
Capture emotion expressions from video, audio, and text with a single pipeline.
- Audio processing
- Image processing
- Machine learning
- + 1
- Python
- Dockerfile
- Shell
PIQMIe
A web tool for mass spectrometry-based proteomics data analyses
- Data Analysis
- mass spectrometry
- Optimized data handling
- + 2
- HTML
- JavaScript
- Python
- + 3
sv-channels
Genome-wide detection of structural variants using deep learning
- Machine learning
- Python
- Jupyter Notebook
- R
- + 1
Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies
Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies
- Identity and Access Management
- Misconfiguration Detection
- Security
- Python
- Markdown
- Other
cffconvert
Command line tool to convert CITATION.cff files to various formats used by reference managers such as Zotero and JabRef.
- Python
- TeX
- HTML
- + 1
evidence
doc2vec-based assisted close reading with support for abstract concept-based search and context-based search
- Text analysis & natural language processing
- TypeScript
- Go
- Jupyter Notebook
- + 5
howfairis
Command line tool to analyze a git repository's compliance with the fair-software.eu recommendations.
- HTML
- Python
- Shell
- + 1
Lightning
Lightning: Fast data processing using GPUs on distributed platforms
- Big data
- GPU
- High performance computing
- Rust
- C++
- Python
LUE
LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.
- Agent-based modeling
- environmental modelling
- field based modelling
- + 6
- C++
- Python
- CMake
- + 6
nanomesh
Python workflow tool for generating meshes from 2D and 3D microscopy image data
- Image processing
- Visualization
- Workflow technologies
- Jupyter Notebook
- Python
- Shell
- + 1