All software
QATrack+
QATrack+ is a fully configurable, free, and open source (MIT License) web application for managing QA data for radiation therapy and medical imaging equipment
- Quality Assurance
- CSS
- Dockerfile
- HTML
- + 6
Remote BMI
Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API
- Basic Model Interface
- BMI
- julia
- + 4
- Batchfile
- Dockerfile
- Julia
- + 3
ROE
Designed for patient-specific prescription determination using personalized dose-response curves. Visualizes TCP and NTCP.
- Treatment Planning and dosimetry
- AGS Script
- Batchfile
- C
- + 20
ROOT
An open-source data analysis framework used by high energy physics and others.
- AppleScript
- Assembly
- Batchfile
- + 29
Tissue Simulation Toolkit
Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.
- Cellular Potts Model
- Chemotaxis
- Embryology
- + 1
- C
- C++
- Cuda
- + 6
TOPASopt
A toolkit for performing optimization with the TOPAS Monte Carlo simulation package. Includes tools for running simulations and analyzing results.
- Treatment Planning and dosimetry
- Batchfile
- Makefile
- PLSQL
- + 1
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.
- federated learning
- Java
- privacy preservation
- + 3
- Dockerfile
- Java
- Jinja
- + 4
Winnow
Confidence control and FDR estimation for de novo peptide sequencing
- Machine learning
- mass spectrometry
- python
- Dockerfile
- Makefile
- Python
- + 1
XrayTIFF2h5
This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.
- Optimized data handling
- Workflows
- Makefile
- Python