All software
ASTRA Toolbox
The ASTRA Toolbox is a Python and MATLAB library of flexible, high-performance GPU-accelerated primitives for 2D and 3D tomography.
- CT
- GPU
- Image reconstruction
- + 4
- Batchfile
- C
- C++
- + 8
Glotaran
Glotaran: A Java-Based Graphical User Interface for the R Package TIMP
- global analysis
- target analysis
- time-resolved spectroscopy
- HTML
- Java
- PowerShell
compareMS2
compareMS2 is a tool for direct comparison of tandem mass spectrometry (MS/MS) datasets, typically from LC-MS/MS, in proteomics or metabolomics, defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics, ecology and food science.
- Ecology
- Food Science
- Forensics
- + 4
- CSS
- Go
- HTML
- + 3
3D Slicer
3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.
- 3D
- 3DSlicer
- Extension
- + 7
- C
- C++
- CMake
- + 6
nanomesh
Python workflow tool for generating meshes from 2D and 3D microscopy image data
- Image processing
- Visualization
- Workflow technologies
- Jupyter Notebook
- PowerShell
- Python
- + 1
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Batchfile
- C++
- CSS
- + 18
Anatomy Matters
Reproducible analysis code for anatomical tumor–immune archetypes in diffuse large B-cell lymphoma.
- computational pathology
- diffuse large B-cell lymphoma
- jupyter notebooks
- + 4
- Jupyter Notebook
- PowerShell
- Python
- + 1
dicomutils
A Python library providing various utilities for working with DICOM files. Aims to simplify common DICOM tasks.
- Software Engineering and Data Infrastructure
- PowerShell
- Python
- Shell
DVTk
DVTk is an open-source project for testing, validating and diagnosing communication protocols and scenarios in medical environments. It supports DICOM, HL7 and IHE integration profiles.
- Software Engineering and Data Infrastructure
- Batchfile
- C
- C#
- + 11
Fabolous-v16
Fabolus is a Windows-based app designed to assist radiation therapy prepare bolus meshes for 3D printing
- Software Engineering and Data Infrastructure
- C#
- Inno Setup
- PowerShell
pyESAPI
A Python wrapper for the Varian Eclipse Scripting API (ESAPI). Allows scripting of Eclipse functions using Python.
- Software Engineering and Data Infrastructure
- PowerShell
- Python
QATrack+
QATrack+ is a fully configurable, free, and open source (MIT License) web application for managing QA data for radiation therapy and medical imaging equipment
- Quality Assurance
- CSS
- Dockerfile
- HTML
- + 6