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Cover image for AMUSE

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

  • High performance computing
  • Multi-scale & multi model simulations
  • Workflow technologies
  • AMPL
  • C
  • Fortran
  • + 25
5
6
Cover image for BridgeDb Java

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Java
  • Perl
  • Shell
  • + 4
18
117
Cover image for CBRAIN

CBRAIN

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

  • CBRAIN
  • cluster
  • Data Analysis
  • + 6
  • Ruby
  • HTML
  • JavaScript
  • + 3
14
1
Cover image for eEcology Annotation Tool

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

  • Inter-operability & linked data
  • Visualization
  • HTML
  • Python
  • Mako
  • + 5
1
6
Cover image for eEcology-SMS-reciever

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

  • Real time data analysis
  • Python
  • Perl
  • Mako
  • + 1
1
0
Cover image for eEcology Tracker calendar

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

  • Visualization
  • Python
  • Makefile
  • JavaScript
  • + 5
1
2
Cover image for Hadrianus scripts

Hadrianus scripts

Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.

  • Inter-operability & linked data
  • Shell
  • Perl
  • Python
2
0
Cover image for iReceptor Gateway

iReceptor Gateway

A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.

  • immunogenomics
  • Immunology
  • iReceptor
  • PHP
  • Blade
  • Shell
  • + 7
12
3
Cover image for IRIDA

IRIDA

Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

  • genomics
  • infectious disease
  • Java
  • JavaScript
  • TypeScript
  • + 7
3
1
Cover image for Nunaliit

Nunaliit

The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.

  • atlas
  • cartography
  • database
  • + 6
  • JavaScript
  • Java
  • HTML
  • + 9
1
0
Cover image for OMUSE

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

  • High performance computing
  • Multi-scale & multi model simulations
  • Fortran
  • Python
  • HTML
  • + 10
6
8
Cover image for OpenDA

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

  • Optimized data handling
  • Java
  • Fortran
  • Python
  • + 21
4
0