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29 software items. Page 0 of 3. 12 items per page. 1 filters active.
1-12 of 29

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • Batchfile
  • C
  • C#
  • + 17
12
2924

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

  • High performance computing
  • Multi-scale & multi model simulations
  • Workflow technologies
  • Assembly
  • C
  • C++
  • + 23
6
335

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Batchfile
  • CSS
  • HTML
  • + 5
18
237

Twiqs

Software behind the web server twiqs.nl, which has provided free access to statistics about Dutch tweets since 2010

  • Big data
  • Text analysis & natural language processing
  • Visualization
  • HTML
  • Java
  • JavaScript
  • + 3
1
75

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

  • High performance computing
  • Multi-scale & multi model simulations
  • Batchfile
  • C
  • C++
  • + 10
8
27

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

  • Inter-operability & linked data
  • Visualization
  • API Blueprint
  • CSS
  • Dockerfile
  • + 5
1
6

PIQMIe

A web tool for mass spectrometry-based proteomics data analyses

  • Data Analysis
  • mass spectrometry
  • Optimized data handling
  • + 2
  • Dockerfile
  • HTML
  • JavaScript
  • + 3
1
5

iReceptor Gateway

A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.

  • immunogenomics
  • Immunology
  • iReceptor
  • Blade
  • Dockerfile
  • HTML
  • + 7
12
3

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

  • Visualization
  • CSS
  • JavaScript
  • Makefile
  • + 5
1
2

ghc

GHC with stream fusion, used as benchmark in the publication: Higher Order Patterns for Rewrite Rules

  • compiler
  • fusion
  • higher order matching
  • + 2
  • Automake
  • C
  • C++
  • + 16
1
1

Analizo

Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.

  • Software Evolution
  • Source Code Metrics
  • Static Analysis
  • C
  • C#
  • C++
  • + 7
2
1

CBRAIN

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

  • CBRAIN
  • cluster
  • Data Analysis
  • + 6
  • CSS
  • HTML
  • JavaScript
  • + 3
14
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