Software | Research Software Directory

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

Dynamics
optimization
Parameter estimation
+ 3

(Batchfile)
(C)
(C#)
+ 17

12

2889

OpenLB

OpenLB is a C++ package for the implementation of lattice Boltzmann methods (LBM) to address a vast range of transport problems, e.g. in computational fluid dynamics. The modular open source code enables fast implementation of academic test problems and advanced engineering applications.

Computational Fluid Dynamics
High Performance Computation
Lattice Boltzmann Methods
+ 4

(C)
(C++)
(Makefile)
+ 2

26

193

BIAS

A toolbox for detecting structural bias in continuous optimization heuristics.

Bias
Metaheuristics
optimization
+ 1

(Dockerfile)
("Jupyter Notebook")
(Python)
+ 1

3

33

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

Machine learning
optimization
python

(Makefile)
(Python)
(R)

1

21

TulipaEnergyModel

This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.

Energy system analysis
Energy system modelling
Integrated energy systems
+ 4

(Julia)
(Python)
(Ruby)
+ 2

9

6

ROBIST

Robust Optimization by Iterative Scenario Sampling and Statistical Testing

optimization
python

(Python)

2

1

Artifact for paper (Alpinist: an Annotation-Aware GPU Program Optimizer)

Annotation-aware
Deductive verification
GPU
+ 2

4

0

MLAT

Solver for MLAT localization problem + tracking software

control theory
OBservers
optimization

(C++)
(Markdown)
(Other)
+ 1

2

0

Programs to evaluate superoptimizer STOKE.

compiler
optimization
stochastic

1

0

SCINTILLATION_COMSOL

Code underlying: Shape Optimization of Scintillation Crystals through COMSOL

COMSOL
FEM
optimization
+ 1

(HTML)
(Markdown)
(Matlab)
+ 2

1

0

Simulation code for the PhD thesis: Exploiting structure in distributionally robust optimization

ambiguity sets
distributionally robust optimization
optimization
+ 2

1

0

Supplementary code to the paper: Flexible Enterprise Optimization With Constraint Programming

Constraint programming (Computer science)
deep learning
Enterprise engineering
+ 2

2

0