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Cover image for nanomesh

nanomesh

Python workflow tool for generating meshes from 2D and 3D microscopy image data

  • Image processing
  • Visualization
  • Workflow technologies
  • Jupyter Notebook
  • Python
  • Shell
  • + 1
3
2
Cover image for Emo-spectre

Emo-spectre

Interactive visualization and exploration of multi modal time-series data and video

  • Visualization
  • Workflow technologies
  • PLpgSQL
  • Vue
  • JavaScript
  • + 5
5
1
Cover image for i-VRESSE workflow-builder

i-VRESSE workflow-builder

Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.

  • Workflow technologies
  • TypeScript
  • Python
  • CSS
  • + 3
5
1
Cover image for scriptcwl

scriptcwl

Create CWL workflows by writing a simple Python script.

  • CWL
  • Workflow technologies
  • Python
  • Common Workflow Language
8
1
Cover image for snakemake-wrf

snakemake-wrf

A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.

  • geospatial
  • High performance computing
  • python
  • + 1
  • Jupyter Notebook
  • Python
  • Shell
2
1
Cover image for Workflomics

Workflomics

Web platform for workflow exploration and benchmarking in bioinformatics

  • Inter-operability & linked data
  • Workflow technologies
  • TypeScript
  • CSS
  • HTML
  • + 1
7
1
Cover image for WRF-runner

WRF-runner

Simple shell script to run a complete WPS/WRF experiment in one go

  • climate
  • Forecasting
  • workflow
  • + 1
  • Shell
2
1
Cover image for i-VRESSE bartender

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

  • Workflow technologies
  • Python
  • Dockerfile
  • Mako
3
0
Cover image for Cerise

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

  • High performance computing
  • Optimized data handling
  • Workflow technologies
  • Python
  • Common Workflow Language
  • Dockerfile
  • + 2
1
0
Cover image for check-deps

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

  • Dependency Hell
  • python
  • Workflow technologies
  • Python
  • CSS
  • Awk
  • + 2
1
0
Cover image for Chemical Analytics Platform

Chemical Analytics Platform

Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.

  • Workflow technologies
  • Shell
  • Smarty
2
0
Cover image for Experiment Launcher

Experiment Launcher

Generate and launch Jupyter notebooks for your users.

  • Workflow technologies
  • Python
  • Makefile
2
0