rWikiPathways

R Client library for the WikiPathways API (https://webservice.wikipathways.org/) (license: MIT).

WikiPathays is described in the following papers:

• 2016 NAR paper by Kutmon et al.
• 2018 NAR paper by Slenter et al.
• 2021 NAR paper by Martens et al.
• 2024 NAR paper by Agrawal et al.

If you like this package, or want to make it easier to work with Xrefs, then
you may also like these R packages:

• BridgeDbR
• PathVisioRPC
• RCy3

Getting Started

• Documentation site
• Overview vignette

How to install

Official bioconductor releases (recommended)

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("rWikiPathways")

Note: Be sure to use the latest Bioconductor and recommended R version

Unstable development code from this repo (at your own risk)

install.packages("devtools")
library(devtools)
install_github('wikipathways/rWikiPathways', build_vignettes=TRUE)
library(rWikiPathways)