Cunliang Geng
GameBus FHIR Layer
Enable FHIR service for GameBus and beyond
- Data Harmonization
- FHIR
- healthcare
- + 1
- Dockerfile
- Java
- Shell
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- Makefile
- Mustache
- Python
- + 2
TaxoTagger
DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Makefile
- Mustache
- Python
Introduction to deep learning lesson
This lesson gives an introduction to deep learning.
- deep learning
- lesson
- python
- Jupyter Notebook
- Makefile
- Python
- + 1
TaxoTagger Webapp
Webapp for DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Python
Excel-to-fhir
A utility to assist in managing FHIR resources in spreadsheets.
- Data processing
- FHIR
- TypeScript
docker sandbox templates
Enhanced docker sandbox templates for using AI agents in a secure vm-based sandbox
- AI agent
- docker
- LLM security
- + 2
- Dockerfile
- HCL
- Makefile
- + 1
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Makefile
- Python
PyTorch Performance Analysis
Lessons on PyTorch Performance Analysis: from Profiling to Optimization
- deep learning
- GPU
- High performance computing
- + 3
- Jupyter Notebook
- Python
devcontainer
CLI to create devcontainer template for running AI agents in a container
- AI agent
- containers
- docker
- + 2
- Makefile
- Python
- Shell