All software
MDStudio
A tool to run molecular dynamics workflows.
- High performance computing
- Real time data analysis
- Workflow technologies
- Python
- CSS
- TypeScript
- + 5
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
PSSMGen
Generates consistent PSSM and PDB files for protein-protein complexes
- Big data
- High performance computing
- Optimized data handling
- Python
- Makefile
eAstroViz
This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.
- LOFAR
- radio astronomy
- RFI
- Java
- C++
- Cuda
- + 3
LUE
LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.
- Agent-based modeling
- environmental modelling
- field based modelling
- + 6
- C++
- Python
- CMake
- + 6
SalientDetector-python
If you want to automate your object detection or photo-identification image tasks in an easy way with free open-source software, the SalientDetector-Python is the tool for you
- Image processing
- Jupyter Notebook
- Python
- Makefile
eEcology Tracker calendar
Calendar overview with daily statistics of GPS-trackers used to track bird movements.
- Visualization
- Python
- Makefile
- JavaScript
- + 5
Entangled
Entangled makes literate programming easier. It keeps markdown and program source in sync. This makes it more convenient to extend and debug your literate code.
- Literate Programming
- open science
- python
- + 2
- Python
- C++
- Makefile
- + 2
Ricgraph - Research in context graph
With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.
- graph
- graph database
- research in context graph
- + 2
- Python
- Makefile
- Shell
- + 5
Analizo
Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.
- Software Evolution
- Source Code Metrics
- Static Analysis
- Perl
- C++
- C
- + 7
byteparsing
Parser library for reading custom binary files from Python.
- Big data
- Multi-scale & multi model simulations
- Optimized data handling
- Jupyter Notebook
- Python
- C++
- + 5
Emo-spectre
Interactive visualization and exploration of multi modal time-series data and video
- Visualization
- Workflow technologies
- PLpgSQL
- Vue
- JavaScript
- + 5