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1-11 of 11

Xenon command line interface

A command line interface for the Xenon library that allows you to use remote machines to do your computations.

High performance computing

Java
Common Workflow Language
Dockerfile
+ 2

nlppln

A flexible solution to build text mining workflows that allows you to quickly combine Natural Language Processing tools from different sources.

Text analysis & natural language processing

Python
Common Workflow Language
Dockerfile

adhtools

Use adhtools for analyzing Arabic corpora.

Text analysis & natural language processing
Visualization
Workflow technologies

Jupyter Notebook
Python
Common Workflow Language
+ 1

fairworkflows

A python library for constructing, annotating and publishing scientific workflows described using semantic technologies.

Python
HTML
Common Workflow Language
+ 1

ochre

A tool to clean up text generated by OCR using individual words as well as their context.

Machine learning
Text analysis & natural language processing

Common Workflow Language
Jupyter Notebook
Python
+ 2

Emo-spectre

Interactive visualization and exploration of multi modal time-series data and video

Visualization
Workflow technologies

PLpgSQL
Vue
JavaScript
+ 5

scriptcwl

Create CWL workflows by writing a simple Python script.

CWL
Workflow technologies

Python
Common Workflow Language

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Python
Shell
Smarty
+ 5

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4

One button compute

Web application for running a CWL workflow on a bunch of files.

Optimized data handling
Workflow technologies

Python
HTML
Common Workflow Language