Ctrl KSoftwareProjectsOrganisationsFeedback Sign inCtrl KLimited functionality: Your browser does not support JavaScript.Software HighlightsBrowse all HighlightsAll software1FilterClearOrder byMentionsOrder byKeywords91Program languages81Licenses15Items121-12 of 39COPASICOPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.DynamicsoptimizationParameter estimation+ 3C++JavaFortran+ 17122693Parallel Ice Sheet Model (PISM)An open-source modelling framework for ice sheets and glaciersC++geophysicsGlacier+ 5C++PythonTeX+ 933877DUNE (Distributed and Unified Numerics Environment)DUNE, the Distributed and Unified Numerics Environment, is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. It supports the easy, flexible, and efficient implementation of finite element and volume methods. DUNE is C++ code and also has a Python interface.C++Grid-based PDE methodsHigh performance computing+ 5C++CMakePython+ 213547DuMuxDuMux - DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media and more. The swiss army knife of porous media research. Open-source simulator in modern C++.Earth and Environmental SciencesEngineeringFinite volume method+ 9C++CMakePython+ 221414AMUSECombine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.High performance computingMulti-scale & multi model simulationsWorkflow technologiesCFortranPython+ 266280SAGECalFast, memory efficient and GPU accelerated radio interferometric calibration programBig dataGPUHigh performance computingCC++Cuda+ 54184open-DARTSOpen Delft Advanced Research Terra Simulator is a simulation framework for forward and inverse modelling and uncertainty quantification of multi-physics (thermo-hydro-mechanical-chemical) processes in geo-engineering applications as geothermal, CO2 sequestration, water pumping, and hydrogen storage.energy transitionenvironmental modellinggeothermal+ 3PythonC++Cuda+ 21344AMBERA real-time pipeline to search for Fast Radio Bursts and other transient radio sources.Big dataGPUHigh performance computing+ 1C++CMake325DALESDALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers. FortranCTeX+ 82411FastMLCDetect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.Big dataMachine learningVisualizationC++CMakefile+ 55113D Slicer3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.3D3DSlicerExtension+ 7C++PythonCMake+ 545MagnumPI - Potential IntegratorA package for the calculation of scattering angles and cross sections.Inter-operability & linked dataVisualizationC++MathematicaPython+ 2651234
