All software
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
scikit-talk
Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.
- conversation
- language corpora
- turn-taking
- Python
- Shell
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- R
GitHub action to set up apptainer
GitHub action for setting up apptainer in a Continous Integration job
- High performance computing
- TypeScript
- Shell
- JavaScript
SFINCS-BMI-server
grpc4bmi wrapper around Delteras/sfincs BMI for use with eWaterCycle
- Jupyter Notebook
- C++
- Dockerfile
- + 1
ShareTrait website
Share Trait web application is a web application that allows users to deposit trait data in the Share Trait database.
- Data
- Inter-operability & linked data
- metadata
SkyCoords.jl
Astronomical coordinate systems in Julia
- astronomy
- Astrophysics
- Coordinate systems
- + 1
- Julia
SLURM CLI-API Proxy
SLURM CLI-API Proxy client is a tool designed to bridge existing applications and scripts that rely on the SLURM CLI. The tool mimics traditional SLURM CLI commands, translating them into REST API calls, enabling seamless integration of existing tools with external SLURM workload managers.
- Arvados
- Proxy
- SLURM
- Python
- Shell
- Go
slurm-mongo
A package to download slurm usage from a supercomputer and upload it to MongoDB
- Big data
- High performance computing
- SLURM
- Python
Slurm time on Jupyter
Display Slurm job remaining time in Jupyter top bar
- High performance computing
- jupyter notebooks
- SLURM
- Python
- TypeScript
- JavaScript
- + 1
SmartPlay
Android OS Wear Application to measure children's activity when playing.
- Psychology
- Real time data analysis
- Visualization
- Kotlin
- Svelte
- TypeScript
- + 2
SMP decision tree
SMP decision tree is a questionnaire for creating a Software Management Plan (SMP).
- metadata
- Project management
- software sustainability
- Shell
- Python