All software
Overture Arranger
Data can be messy, let Arranger organize it for you.
- (CSS)
- (HTML)
- (JavaScript)
- + 3
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Ego
A stateless authorization and user management service.
- Data Indexing
- Elasticsearch Automation
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Maestro
Organizing your distributed data into one index.
- Data Indexing
- Elasticsearch Automation
- (Dockerfile)
- (Groovy)
- (Java)
- + 1
Overture Score
Transfer data quickly and easily to and from any cloud-based storage system.
- Cancer Genomics
- Cloud Storage & Transfer
- (Dockerfile)
- (Java)
- (Makefile)
- + 1
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- (Batchfile)
- (Dockerfile)
- (Go)
- + 7
PACTE
A Collaborative Electronic Text Annotation Platform
- collaborative
- corpus
- disambiguation
- + 5
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- (Dockerfile)
- (Python)
- (Shell)
paradigma
A toolbox to calculate digital biomarkers for wearable sensors in Parkinson's disease.
- (Python)
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- (CSS)
- (Dhall)
- (HTML)
- + 5
ParticleDA.jl
Julia package to perform data assimilation with particle filters, supporting both thread-based parallelism and distributed processing using MPI.
- Data assimilation
- Julia Package
- Particle filter
- (Julia)
- ("Jupyter Notebook")
- (Shell)
PartitionedArrays.jl
This package provides distributed (a.k.a. partitioned) vectors and sparse matrices like the ones needed in distributed finite differences, finite volumes, or finite element computations.
- GPU
- High performance computing
- Julia Package
- (Julia)
- (Shell)