All software
DTBase
DTBase is a starter kit for making your own digital twin. Forking it will get you started with a database, a backend API, infrastructure for data ingress and running models, a basic web frontend, etc. You can then start building the more bespoke features of your digital twin on this foundation.
- Digital Twins
- CSS
- HTML
- JavaScript
- + 3
duckdb-mmcif
Read/write protein structure mmCIF files using SQL with DuckDB
- Data
- Data Analysis
- Optimized data handling
- C++
- CMake
- Makefile
- + 2
DumME
Scikit-learn compatible version of Mixed-Effects Random Forests
- Python
DVH-analytics
Public archive, no longer supported as of Feb 2, 2022. Designed for building local database of radiation oncology treatment planning data.
- Software Engineering and Data Infrastructure
- Python
DVTk
DVTk is an open-source project for testing, validating and diagnosing communication protocols and scenarios in medical environments. It supports DICOM, HL7 and IHE integration profiles.
- Software Engineering and Data Infrastructure
- Batchfile
- C
- C#
- + 11
e2e-Dutch
Coreference resolution for Dutch: automatically links references to the same entity in Dutch written texts.
- Machine learning
- Text analysis & natural language processing
- C++
- Python
- Shell
EasyPACS
EasyPACS is the simpliest PACS server for your dicom files. It uses DCM4CHEE listener and converts dicom files into jpegs.
- Software Engineering and Data Infrastructure
- CSS
- HTML
- Java
- + 1
eEcology-SMS-reciever
If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.
- Real time data analysis
- Dockerfile
- Mako
- Perl
- + 1
EEG_age_prediction
Deep learning for age prediction using EEG data
- deep learning
- EEG Signal
- Time Series
- Jupyter Notebook
- Python
- Shell
EEG epilepsy diagnosis
R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.
- Machine learning
- R
- Rebol
Effort Sharing
Analysis and plotting scripts for effort sharing, associated with the Carbon Budget Explorer
- Jupyter Notebook
- Python
Eigencuda
Offload Eigen matrix-matrix multiplications to an Nvidia GPU
- GPU
- High performance computing
- C++
- CMake