All software
mibiremo
MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.
- Makefile
- Python
minimism
A minimal distributed MPI port from UFEMISM, used as a basis for UFEMISM2.0
- Finite volume method
- ice sheet
- MPI
- + 1
- Fortran
- Makefile
- Mathematica
- + 4
MITK
Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.
- Imaging and Image Processing
- Batchfile
- C
- C++
- + 8
mri_distortion_toolkit
A toolkit to correct geometric distortion in MR images. Includes tools for converting DICOM to NIfTI, and generating distortion correction maps.
- Imaging and Image Processing
- Batchfile
- CSS
- HTML
- + 3
OBiBa Agate
Agate is a web application that offers users related services to the OBiBa software stack.
- authentication
- Epidemiology
- Batchfile
- FreeMarker
- HTML
- + 7
OBiBa Mica
Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.
- euCanSHare, software integration
- Batchfile
- CSS
- FreeMarker
- + 7
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- ANTLR
- Batchfile
- HTML
- + 8
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
OsiriX
Widely used DICOM viewer. Supports 2D, 3D, 4D, 5D viewing.
- Imaging and Image Processing
- ActionScript
- AppleScript
- C
- + 12
oTree Development Environment
A Docker environment for programming against multiple oTree server
- oTree
- Dockerfile
- Makefile
- Shell
Overture Arranger
Data can be messy, let Arranger organize it for you.
- CSS
- HTML
- JavaScript
- + 3