All software
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- Dockerfile
- Makefile
- + 2
cerulean
A Python 3 library for talking to HPC clusters and supercomputers.
- High performance computing
- SFTP
- SLURM
- + 2
- Dockerfile
- Python
- Shell
Cesium-ncWMS
Web Application that visualizes data stored in the NetCDF format on a globe.
- Visualization
- CSS
- Dockerfile
- HTML
- + 1
CHAMP-EU
The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.
- Chemistry
- High performance computing
- Physics
- + 1
- Assembly
- Berry
- Brainfuck
- + 14
CIL
Provides modular optimisation framework for prototyping reconstruction methods. Tools for loading, preprocessing, visualising tomographic data.
- Imaging and Image Processing
- C
- C++
- CMake
- + 2
cleanX
CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.
- Image processing
- Machine learning
- Dockerfile
- Jupyter Notebook
- Python
- + 3
ClinDIG
ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.
- clinical
- federated
- genomics
- + 1
- CSS
- Dockerfile
- Go Template
- + 5
contextburn
A run-efficiency meter for language-model coding agents: the share of paid tokens that became output, not context re-reading.
- coding agents
- context window
- cost efficiency
- + 3
- Dockerfile
- JavaScript
- Python
- + 2
CrowdED
CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.
- Citizen Science
- Crowdsourcing
- Data Simulation
- Dockerfile
- Python
- R
cvasl
This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.
- Batchfile
- Dockerfile
- Jupyter Notebook
- + 3
cwltool
The reference implementation of the Common Workflow Language standards
- CommonWL
- CWL
- SciWorkflows
- Common Workflow Language
- Dockerfile
- JavaScript
- + 4
deid
Aims to provide best effort anonymization for medical images. Mirrors CTP cleaning method.
- Software Engineering and Data Infrastructure
- Dockerfile
- Python