All software
pybacting
Python wrapper around Bacting.
- Biology
- Chemistry
- python
- Just
- Python
PyBeam-QA
A Python library for performing beam quality assurance tests in radiotherapy. The software is in an early stage of development.
- Quality Assurance
- HTML
- JavaScript
- Python
- + 1
pyCERR
pyCERR provides convenient data structure for imaging metadata and their associations. Utilities are provided to to extract, transform, organize metadata and visualize results of image processing for image and dosimetry features, image processing for AI model training and inference.
- Treatment Planning and dosimetry
- Jupyter Notebook
- Python
- Shell
Pycoeus
Pycoeus is a command-line tool and python package designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.
- deep learning
- gis
- Machine learning
- + 2
- Python
Pydicer
Eases conversion of Radiotherapy DICOM data to research-ready format (NIfTI). Provides analysis functionality.
- Imaging and Image Processing
- Makefile
- Python
- Shell
pydicom
Reads, modifies, and writes DICOM data in a "pythonic" way. General-purpose framework, does not handle specifics of individual SOP classes.
- Software Engineering and Data Infrastructure
- Makefile
- Python
- Shell
PyELSEPA
Python wrapper for ELSEPA, a numeric code for computing elastic scattering cross-sections for electrons and positrons off neutral atoms.
- Dockerfile
- Python
pyESAPI
A Python wrapper for the Varian Eclipse Scripting API (ESAPI). Allows scripting of Eclipse functions using Python.
- Software Engineering and Data Infrastructure
- PowerShell
- Python
Py-HLA-Match
Py-HLA-Match is a Python library for standardised, rule-based HLA (Human Leukocyte Antigen) matching in retrospective analyses, method development, benchmarking, and in silico studies in immunogenetics and related fields.
- antigen recognition domain
- ARD
- HLA
- + 10
- Python
Pylinac
Pylinac provides TG-142 quality assurance (QA) tools to Python programmers in the field of therapy and diagnostic medical physics.
- Imaging and Image Processing
- Python
- Shell
pymcc
Module that reads PTW mephisto mcc files from watertank scans or array files. pymcc relies on Pandas and uses a Pandas DataFrame to store the measurement values within the class objects.
- Treatment Planning and dosimetry
- Python
PyMedPhys
PyMedPhys is an open-source Medical Physics Python library built by an open community that values code sharing, review, improvement, and learning from each other.
- Quality Assurance
- CSS
- HTML
- JavaScript
- + 2