All software
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- Java
- JavaScript
- TypeScript
- + 6
ISAAC Chrome extension
Chrome Web Extension for support of the NWO ISAAC platform. This extension is not endorsed or developed by the NWO.
- BibTeX
- CITATION.cff
- DataCite
- + 1
- JavaScript
- HTML
- CSS
- + 1
i-VRESSE workflow-builder
Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.
- Workflow technologies
- TypeScript
- Python
- CSS
- + 3
LORIS
Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.
- Computational Neuroscience
- database
- neuroimaging
- + 3
- PHP
- JavaScript
- TypeScript
- + 9
MMSODA Toolbox for MATLAB
MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.
- HTML
- MATLAB
- TeX
- + 5
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- HTML
- Jupyter Notebook
- Python
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Java
- JavaScript
- HTML
- + 4
PyChelator
PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.
- application
- calcium
- chelator
- + 7
- Jupyter Notebook
- JavaScript
- HTML
- + 2
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- C++
- Makefile
- Python
- + 9
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Java
- JavaScript
- GAP
- + 17
Workflomics
Web platform for workflow exploration and benchmarking in bioinformatics
- Inter-operability & linked data
- Workflow technologies
- TypeScript
- CSS
- HTML
- + 1
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Other
- C
- HTML
- + 15