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PAVICS

PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.

analysis
climate
Climate change
+ 5

HTML
Jupyter Notebook
Python
+ 3

PyChelator

PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.

application
calcium
chelator
+ 7

Jupyter Notebook
JavaScript
HTML
+ 2

snakemake-wrf

A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.

geospatial
High performance computing
python
+ 1

Jupyter Notebook
Python
Shell

WAM2layers

WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).

atmospheric rivers
ERA5
hydrological cycle
+ 4

Python
Jupyter Notebook

aiproteomics

Generate and compare deep learning models for generating synthetic mass spectral libraries

Machine learning
mass spectrometry
phosphoproteomics
+ 1

Jupyter Notebook
Python
Shell

caselawnet

Caselawnet constructs citation networks from collections of Dutch case law.

Big data

Jupyter Notebook
Python
HTML
+ 1

cleanX

CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.

Image processing
Machine learning

Jupyter Notebook
Python
TeX
+ 3

cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
Dockerfile
+ 2

Data Processing (What Works When for Whom)

Data processing scripts for the project What Works When for Whom

Jupyter Notebook
Python
Shell

Democracy text classification

LLM transfer learning to classify country reports into democracy dimensions.

fine-tuning
llm
transfer learning

Jupyter Notebook
Python

Democracy Topic Modelling

Various Jupyter notebooks for topic modelling on democracy texts including BERT and dictionary, keyword-based approaches.

BERT
dictionary
Topic Modelling

Jupyter Notebook
Python

Distance explainer

Explainable AI tool for explaining models that create embeddings.

Embedded spaces
XAI

Python
Jupyter Notebook
Shell