All software
ReSurfEMG
ReSurfEMG is an open source collaborative python library for analysis of respiratory electromyography (EMG). The library includes functions for pre-processing, analysis and machine learning.
- electrophysiology
- EMG
- Machine learning
- + 1
- Batchfile
- Dockerfile
- Jupyter Notebook
- + 3
ROE
Designed for patient-specific prescription determination using personalized dose-response curves. Visualizes TCP and NTCP.
- Treatment Planning and dosimetry
- AGS Script
- Batchfile
- C
- + 20
ROOT
An open-source data analysis framework used by high energy physics and others.
- AppleScript
- Assembly
- Batchfile
- + 28
RTEMIS
Advanced Machine Learning and Visualization
- Artificial Intelligence
- Just
- Python
- R
- + 1
RTpipeline
RTpipeline is a comprehensive, research-grade pipeline that transforms raw DICOM radiotherapy exports into analysis-ready data. It bridges the technical gap between clinical Treatment Planning Systems (TPS) and statistical/ML analysis
- Clinical workflow and applications
- Dockerfile
- HTML
- Jupyter Notebook
- + 2
docker sandbox templates
Enhanced docker sandbox templates for using AI agents in a secure vm-based sandbox
- AI agent
- docker
- LLM security
- + 2
- Dockerfile
- HCL
- Makefile
- + 1
scikit-talk
Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.
- conversation
- language corpora
- turn-taking
- Python
- Shell
GitHub action to set up apptainer
GitHub action for setting up apptainer in a Continous Integration job
- High performance computing
- JavaScript
- Shell
- TypeScript
SigmaCV
Auto-generates clean, customizable academic CVs from open research data (OpenAlex, ORCID, Crossref, DataCite, Open Editors Plus) — free for individuals, open-source, FAIR by design.
- academic CV
- bibliometrics
- CSL
- + 6
- CSS
- Dockerfile
- JavaScript
- + 5
SIRF
This software is the main output of SyneRBI, the Collaborative Computational Platform for Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR).
- Imaging and Image Processing
- C
- C++
- CMake
- + 5
SLURM CLI-API Proxy
SLURM CLI-API Proxy client is a tool designed to bridge existing applications and scripts that rely on the SLURM CLI. The tool mimics traditional SLURM CLI commands, translating them into REST API calls, enabling seamless integration of existing tools with external SLURM workload managers.
- Arvados
- Proxy
- SLURM
- Go
- Python
- Shell
Smithsonian Voyager
Open source 3D explorer and authoring tool suite.
- CSS
- Dockerfile
- GLSL
- + 5