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admtools

Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.

Age-depth modeling
Geochronology
Sedimentology
+ 1

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

CRiSp

CRiSp (City River Spaces) provides tools to automate the morphological delineation of riverside urban areas.

Data Analysis
geospatial
R
+ 1

CrowdED

CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.

Citizen Science
Crowdsourcing
Data Simulation

Python
R
Dockerfile

cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
R
+ 3

EEG epilepsy diagnosis

R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.

Machine learning

R
Rebol

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

Multi-scale & multi model simulations

Python
C++
Dockerfile
+ 5

H-gear

This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.

American Revolution
semi-supervised topic modeling
social network analysis
+ 2

R
Python
Batchfile

m4ma

An R package containing C++ implementations to speed up the simulation and parameter estimation of the Predictive Pedestrian model.

geospatial
High performance computing
Real time data analysis

Nature Counts

The NatureCounts platform allows users to collect, archive, interpret and access wildlife data to advance the understanding of bird populations across the Western Hemisphere.

bird monitoring
conservation science
open data

OBiBa Opal

Opal is OBiBa's core data repository application for epidemiological studies.

euCanSHare, software integration

Java
Vue
JavaScript
+ 8