All software
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Go
- Shell
- R
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Other
- C
- HTML
- + 15
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
Code underlying the publication: Simulating event based pesticide transport with runoff and erosion, OpenLISEM-pesticide v.1
- environmental fate
- erosion
- modelling
- + 3
- Other
- R
- Markdown
- + 1
course-introduction-map
Interactive map for engaged learning for large soil and landscape-related courses.
- Education
- introduction lecture
- landscape
- + 1
- Other
- R
- Markdown
- + 1
IntervalMDPAbstractions.jl_ReproducibilityPackage
Data and code underlying the publication: Scalable control synthesis for stochastic systems via structural IMDP abstractions
- embedded systems
- Markov processes
- Stochastic control and optimization
- JSON
- C++
- HTML
- + 10
mml_nbh_class_paper
Code underlying the paper "The Spatio-Temporal Evolution of Social Inequalities in Cities: A Multidimensional, Multiscalar and Longitudinal Approach for Neighbourhood Classification"
- Cluster Analysis
- code
- geodemographics
- + 6
- R
- Markdown
- Other
Research compendium for FAIR Sharing is Caring poster
Research compendium for FAIR Sharing is Caring poster
- Data Sharing
- FAIR data
- open science
- + 1
- Other
- HTML
- CSS
- + 4
Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances
Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances
- Brassicaceae
- Hirschfeldia incana
- photosynthesis
- + 1
- Python
- R
- Other
- + 1
TUD R Cafe Plot-a-thon: 4TU.RD stats
TUD R Cafe Plot-a-thon: 4TU.RD stats
- data visualization
- plot-a-thon
- Statistics
- Other
- JSON
- R
- + 2
addFeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.
- Image processing
- mass spectrometry
- R