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cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
Dockerfile
+ 2

H-gear

This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.

American Revolution
semi-supervised topic modeling
social network analysis
+ 2

R
Python
Batchfile

OBiBa Agate

Agate is a web application that offers users related services to the OBiBa software stack.

authentication
Epidemiology

Java
FreeMarker
JavaScript
+ 6

OBiBa Mica

Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.

euCanSHare, software integration

Java
JavaScript
FreeMarker
+ 6

OBiBa Opal

Opal is OBiBa's core data repository application for epidemiological studies.

euCanSHare, software integration

Java
Vue
JavaScript
+ 8

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

Optimized data handling

Java
Fortran
Python
+ 22

Overture Song

Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.

Cancer Genomics
Metadata Management
Metadata Validation

Java
Python
Shell
+ 5

PyXenon

Python wrapper for the Xenon programming interface to various compute and storage resources.

Python
Shell
Batchfile

ReSurfEMG

ReSurfEMG is an open source collaborative python library for analysis of respiratory electromyography (EMG). The library includes functions for pre-processing, analysis and machine learning.

electrophysiology
EMG
Machine learning
+ 1

Jupyter Notebook
Python
TeX
+ 3