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doc2sentences

A python library to split sentence-wise and convert various document formats to CSV format.

CSV
PDF
python
+ 1

Rich Text Format
Python
Shell

Drug named entity recognition

A lightweight Python library for finding drug names in a string, otherwise known as named entity recognition (NER) and named entity linking. This library finds only high confidence drugs and doesn't support misspellings at present.

Data Science
Medical text
Natural Language Processing
+ 1

Python
Jupyter Notebook

DTBase

DTBase is a starter kit for making your own digital twin. Forking it will get you started with a database, a backend API, infrastructure for data ingress and running models, a basic web frontend, etc. You can then start building the more bespoke features of your digital twin on this foundation.

Digital Twins

Python
HTML
TypeScript
+ 3

DumME

Scikit-learn compatible version of Mixed-Effects Random Forests

Python

DuMux

DuMux is short for "DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media". It is an open-source simulator and research code in modern C++. It provides a framework for the implementation and application of porous media model concepts and constitutive relations.

porous media
Simulation

C++
CMake
Python
+ 2

e2e-Dutch

Coreference resolution for Dutch: automatically links references to the same entity in Dutch written texts.

Machine learning
Text analysis & natural language processing

Python
C++
Shell

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

Real time data analysis

Python
Perl
Mako
+ 1

EEG_age_prediction

Deep learning for age prediction using EEG data

deep learning
EEG Signal
Time Series

Jupyter Notebook
Python
Shell

EEG epilepsy diagnosis

R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.

Machine learning

R
Rebol

Eigencuda

Offload Eigen matrix-matrix multiplications to an Nvidia GPU

GPU
High performance computing

C++
CMake

eitprocessing

eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.

Jupyter Notebook
Python
Dockerfile

emvoice

A Python package for computing emotion expression-related features from speech signals.

Emotion expressions
python
Speech processing

Python
Shell