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Cover image for snakemake-wrf

snakemake-wrf

A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.

  • geospatial
  • High performance computing
  • python
  • + 1
  • Jupyter Notebook
  • Python
  • Shell
2
1
Cover image for TaxoTagger

TaxoTagger

DNA barcode identification, powered by semantic searching.

  • Fungi
  • Machine learning
  • semantic search
  • + 3
  • Python
  • Makefile
  • Mustache
1
1
Cover image for Umple

Umple

Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort

  • Code Generation
  • Software Modeling
  • State Machines
  • + 1
  • Java
  • JavaScript
  • GAP
  • + 17
14
1
Cover image for WAM2layers

WAM2layers

WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).

  • atmospheric rivers
  • ERA5
  • hydrological cycle
  • + 4
  • Python
  • Jupyter Notebook
  • Shell
4
1
Cover image for Workflomics

Workflomics

Web platform for workflow exploration and benchmarking in bioinformatics

  • Inter-operability & linked data
  • Workflow technologies
  • TypeScript
  • CSS
  • HTML
  • + 1
7
1
Cover image for WRF-runner

WRF-runner

Simple shell script to run a complete WPS/WRF experiment in one go

  • climate
  • Forecasting
  • workflow
  • + 1
  • Shell
2
1
Cover image for Abinit

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

  • Fortran
  • Python
  • M4
  • + 15
3
0
Cover image for admtools

admtools

Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.

  • Age-depth modeling
  • Geochronology
  • Sedimentology
  • + 1
  • R
1
0
Cover image for Aiida-CHAMP

Aiida-CHAMP

The aiida-champ plugin to handle the CHAMP workflow using AiiDA.

  • python
  • workflow
  • Python
  • Shell
1
0
Cover image for aiproteomics

aiproteomics

Generate and compare deep learning models for generating synthetic mass spectral libraries

  • Machine learning
  • mass spectrometry
  • phosphoproteomics
  • + 1
  • Jupyter Notebook
  • Python
  • Shell
1
0
Cover image for Allelic Variation Explorer

Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

  • Visualization
  • Python
  • Dockerfile
  • AngelScript
2
0
Cover image for ANNUBeS

ANNUBeS

ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.

  • neural networks
  • Neuroscience
  • Python
2
0