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OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

C++
mass spectrometry
metabolomics
+ 1

C++
MAXScript
Cython
+ 15

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

Pore network modeling

C++
MAXScript
Cython
+ 15

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

Fortran
Python
M4
+ 15

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

CHAMP-EU

The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.

Chemistry
High performance computing
Physics
+ 1

C
Fortran
Nemerle
+ 16

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

Real time data analysis

Python
Perl
Mako
+ 1

Hadrianus scripts

Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.

Inter-operability & linked data

Shell
Perl
Python

JURI

JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.

JavaScript
HTML
CSS
+ 5

LLview

LLview is a set of software components to monitor clusters that are controlled by a resource manager and a scheduler system.

High performance computing
HPC
Monitoring
+ 2

Perl
Python
Shell

Nunaliit

The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.

atlas
cartography
database
+ 6

JavaScript
Java
HTML
+ 9

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

Optimized data handling

Java
Fortran
Python
+ 22

ROOT

An open-source data analysis framework used by high energy physics and others.

C++
C
JavaScript
+ 25