All software
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- CSS
- Dockerfile
- HTML
- + 6
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Automake
- C
- C++
- + 15
GNSS-Perl-toolbox
GNSS-Perl-toolbox for GNSS file management with RINEX editing, filtering, conversion and quality analysis
- gnss
- gnss-file-management
- GPS
- + 4
- Markdown
- Other
- Perl
- + 1
GNSS Precise Point Positioning (PPP) Matlab Toolbox
GNSS Precise Point Positioning (PPP) Matlab Toolbox
- geodesy
- gnss
- gnss-campaign
- + 5
- Markdown
- Matlab
- Other
- + 1
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- C
- C++
- CMake
- + 15
MPI-AMRVAC
MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- FPP
- Jupyter Notebook
- + 4
asrlitcompare
A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.
- ASReview
- inter-rater reliability
- literature screening
- + 1
- AppleScript
- Awk
- Batchfile
- + 14
CHAMP-EU
The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.
- Chemistry
- High performance computing
- Physics
- + 1
- Assembly
- Berry
- Brainfuck
- + 14
eEcology-SMS-reciever
If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.
- Real time data analysis
- Dockerfile
- Mako
- Perl
- + 1
R3BRoot
Software for simulations and data analysis of Reactions with Relativistic Radioactive Beams (R3B) experiments at GSI/FAIR
- cmake
- c-plus-plus
- Data Analysis
- + 13
- C
- C++
- CMake
- + 5
Hadrianus scripts
Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.
- Inter-operability & linked data
- Perl
- Python
- Shell
JURI
JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.
- CSS
- Handlebars
- HTML
- + 5