Ctrl KSoftwareProjectsOrganisationsFeedback Sign inCtrl KLimited functionality: Your browser does not support JavaScript.All software1FilterClearOrder byMentionsOrder byKeywords105Program languages81Licenses121213-24 of 33PathVisioPathVisio is a free open-source software to curate biological pathway models.bioinformaticsPathVisioSystems Biology+ 2JavaHTMLJavaScript+ 492byteparsingParser library for reading custom binary files from Python.Big dataMulti-scale & multi model simulationsOptimized data handlingJupyter NotebookPythonC+++ 521MMSODA Toolbox for MATLABMATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.HTMLMATLABTeX+ 531OpenMSOpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.C++mass spectrometrymetabolomics+ 1C++MAXScriptCython+ 14271OpenPNMOpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.Pore network modelingC++MAXScriptCython+ 1451PhenoTipsPhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders. APIdeep phenotypinggenogram+ 6JavaJavaScriptHTML+ 421Plus ToolkitToolkit for data acquisition, pre-processing, calibration, and real-time streaming of imaging, position tracking, and other sensor data for medical applications.3D Slicerelectromagnetic trackingimage capture+ 7C++CCMake+ 241SimVascularThe only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.CardiovascularFluid mechanicsMedical image computing+ 1C++TclMakefile+ 941UmpleUmple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effortCode GenerationSoftware ModelingState Machines+ 1JavaJavaScriptGAP+ 17141asrlitcompareA tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.ASReviewinter-rater reliabilityliterature screening+ 1HTMLC++JavaScript+ 1420Canadian Writing Research Collaboratory (CWRC)CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.Canadian culture & historycultural studiesdigital humanities+ 1JavaScriptPHPHTML+ 1610CMLXOMJava library for working with Chemical Markup Language files.Chemical Markup LanguageChemistryXMLJavaXSLTHTML+ 120123
