All software
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- (Makefile)
- (Python)
- (TeX)
Turing Data Safe Haven
Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.
- Cloud
- cloud storage
- Infrastructure as code
- + 3
- (Dockerfile)
- (Jinja)
- (Python)
- + 3
WRFpy
WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations
- Data Simulation
- python
- (Python)
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- (Batchfile)
- ("Common Workflow Language")
- (Dockerfile)
- + 2
Code and data underlying the publication: Symmetrization of 2D Polygonal Shapes Using Mixed-Integer Programming
Code and data underlying the publication: Symmetrization of 2D Polygonal Shapes Using Mixed-Integer Programming
- Design
- Digitalization
- Shape optimization
- + 1
- (Automake)
- (C)
- (C++)
- + 3
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
- Feed-forward neural network
- Machine learning
- MATLAB
- + 5
Hydrodynamic Analysis of Marine Structures-Marine Renewable Energies Lab (HAMS-MREL)
Hydrodynamic Analysis of Marine Structures-Marine Renewable Energies Lab (HAMS-MREL)
- BIEM
- HAMS
- HAMS-MREL
- + 4
MATLAB scripts created during the work on "Multi-Δt approach for peak-locking error correction and uncertainty quantification in PIV"
MATLAB scripts created during the work on "Multi-Δt approach for peak-locking error correction and uncertainty quantification in PIV"
- PIV (Particle Image Velocimetry)
- Uncertainty Quantification
Sample dataset and software for FAST-EM array tomography
Sample dataset and software for FAST-EM array tomography
- array tomography
- FAST-EM
- Image processing
- + 1
Shoreline Evolution Model and Appendix A - Supplementary data to the manuscript Challenges and new strategies in assessing multidecadal shore platform sandy beach evolution from aerial imagery
Shoreline Evolution Model and Appendix A - Supplementary data to the manuscript Challenges and new strategies in assessing multidecadal shore platform sandy beach evolution from aerial imagery
- beach change
- beach toe
- beach volume
- + 4
Uncertainty Specification and Analysis for Thermosphere Observations
Uncertainty Specification and Analysis for Thermosphere Observations
- Accelerometer
- GNSS tracking
- Mass density
- + 2
- (C)
- (C++)
- (Fortran)
- + 3
Clustering Geo-data Cubes
Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.
- Big data
- geospatial
- Machine learning
- + 1
- ("Jupyter Notebook")
- (Python)
- (TeX)