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PyChelator

PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.

application
calcium
chelator
+ 7

Jupyter Notebook
JavaScript
HTML
+ 2

qumia-train-scripts

Scripts and files related to ML training for the QUMIA project

Machine learning
Neuromuscular
ultrasound imaging

Jupyter Notebook
Python
Shell

ROBIST

Robust Optimization by Iterative Scenario Sampling and Statistical Testing

optimization
python

Python

Rocket

Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.

Big data
GPU
High performance computing
+ 1

Java
Cuda
C++
+ 2

Rucio deployment for KM3NeT

This repository contains the Rucio deployment for KM3NeT. It can be used as an example of how to deploy Rucio.

Big data
High performance computing

SalientDescriptor-matlab

If you need to automate your image matching tasks for the purposes of object detection or photo-identification in an easy way, the SalientDescriptor-matlab is right for you

Image processing

MATLAB
HTML

SARXarray

An Xarray extension to process coregistered Single Look Complex (SLC) image stacks acquired by Synthetic Aperture Radar (SAR).

Dask
InSAR
Interferometry
+ 6

Python

scriptcwl

Create CWL workflows by writing a simple Python script.

CWL
Workflow technologies

Python
Common Workflow Language

self-hosted runners

Collection of resources to set up GitHub runners on self-hosted infrastructure

High performance computing

Shell
Dockerfile

SimVascular

The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

Cardiovascular
Fluid mechanics
Medical image computing
+ 1

C++
Tcl
Makefile
+ 9

sirup

Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.

ip-rotation
openvpn
python
+ 1

Python
Shell

SlicerIGT

Software toolkit for rapid development of image-guided therapy systems - for minimally invasive medical procedures, where operators rely on computer-generated images rather than direct sight of the target organs.

3D Slicer
deep learning
Medical image computing
+ 2

C++
Python
CMake