All software
Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"
Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"
- cattle
- crop-livestock integration
- East African Highland Banana
- + 5
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- (Java)
- (TeX)
ENCORE
Enhancing Computational Reproducibility
- Communication and replication
- Computational science
- computer science
- + 2
- (HTML)
- (Python)
- (TeX)
gammalearn
Deep Learning for Imaging Cherenkov Telescopes Data Analysis
- cta
- deep learning
- Gamma-ray telescopes
- + 1
- (Dockerfile)
- (Python)
orbitN
Symplectic integrator for near-Keplerian planetary systems
- astronomical solution
- astronomy
- N-body
- + 2
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- (Makefile)
- (Python)
- (TeX)
Turing Data Safe Haven
Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.
- Cloud
- cloud storage
- Infrastructure as code
- + 3
- (Dockerfile)
- (Jinja)
- (Python)
- + 3
WRFpy
WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations
- Data Simulation
- python
- (Python)
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- (Batchfile)
- ("Common Workflow Language")
- (Dockerfile)
- + 2
Code and data underlying the publication: Symmetrization of 2D Polygonal Shapes Using Mixed-Integer Programming
Code and data underlying the publication: Symmetrization of 2D Polygonal Shapes Using Mixed-Integer Programming
- Design
- Digitalization
- Shape optimization
- + 1
- (Automake)
- (C)
- (C++)
- + 3
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
- Feed-forward neural network
- Machine learning
- MATLAB
- + 5
MATLAB scripts created during the work on "Multi-Δt approach for peak-locking error correction and uncertainty quantification in PIV"
MATLAB scripts created during the work on "Multi-Δt approach for peak-locking error correction and uncertainty quantification in PIV"
- PIV (Particle Image Velocimetry)
- Uncertainty Quantification