All software
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- C++
- Makefile
- Python
- + 9
sirup
Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.
- ip-rotation
- openvpn
- python
- + 1
- Python
- Shell
SlicerIGT
Software toolkit for rapid development of image-guided therapy systems - for minimally invasive medical procedures, where operators rely on computer-generated images rather than direct sight of the target organs.
- 3D Slicer
- deep learning
- Medical image computing
- + 2
- C++
- Python
- CMake
snakemake-wrf
A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.
- geospatial
- High performance computing
- python
- + 1
- Jupyter Notebook
- Python
- Shell
TaxoTagger
DNA barcode identification, powered by semantic searching.
- Fungi
- Machine learning
- semantic search
- + 3
- Python
- Makefile
- Mustache
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Java
- JavaScript
- GAP
- + 17
ValidSense
The ValidSense toolbox aims to assess the agreement between two quantitative methods using the Limits of Agreement analysis, aka the Bland-Altman analysis. Four existing variants are available. Moreover, a Longitudinal analysis is developed to assess agreement over time.
- Agreement Analysis
- Bland-Altman
- Limits of Agreement
- + 1
- Python
WAM2layers
WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).
- atmospheric rivers
- ERA5
- hydrological cycle
- + 4
- Python
- Jupyter Notebook
- Shell
Absorption Coefficient Estimator using Domain Adaptation
Code underlying the research project: Extracting absorption coefficients from a room impulse response using a convolutional neural network with domain adaptation
- Absorption Coefficient
- domain adaptation
- Machine learning
- + 3
- Other
- Python
- Markdown
- + 1
A high spatial resolution Extended Spring Indices database over American and European regions
A high spatial resolution Extended Spring Indices database over American and European regions
- Citizen Science
- Climate change
- Cloud computing
- + 4
- Python
- Markdown
- Other
AircraftDuctedFanOptimisation
The Unified Ducted Fan Code and Ducted Fan Optimisation Framework
- Aircraft
- Aircraft performance
- Conceptual aircraft design
- + 7
- Python
- Other
- Markdown
APS
APS: Asses Pedestrian model Speed framework
- Computational Complexity
- Model assessment framework
- Pedestrian models
- + 1
- Python
- Other
- Markdown
- + 1