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152 software items. Page 13 of 13. 12 items per page. 1 filters active.
145-152 of 152

Tissue Simulation Toolkit

Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.

  • Cellular Potts Model
  • Chemotaxis
  • Embryology
  • + 1
  • C
  • C++
  • Cuda
  • + 6
7
0

Unraphael

Unraphael is a computer vision tool for art history, designed to support the analysis of figure-outline similarities in images to study Renaissance copying practices. Its user-friendly interface lets researchers inspect structural patterns, revealing insights into artistic techniques.

  • computational art analysis
  • computer vision
  • Image preprocessing
  • + 3
  • CSS
  • Dockerfile
  • Python
3
0

Verticox+

Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.

  • federated learning
  • Java
  • privacy preservation
  • + 3
  • Dockerfile
  • Java
  • Jinja
  • + 4
2
0

Virus Seq

The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.

  • COVID-19
  • Data portal
  • genomics
  • + 1
  • CSS
  • Dockerfile
  • HTML
  • + 2
1
0

VU-Lab

This is the configuration and documentation page of the LARA lab automation setup at the VU. It incorporates SiLA servers for robotic arm, shakers and a microplate reader and runs the LARA lab automation framework for scheduling and orchestration.

  • Dynamic scheduling
  • laboratory automatization
  • orchestration
  • Batchfile
  • Dockerfile
  • Python
  • + 1
4
0

Winnow

Confidence control and FDR estimation for de novo peptide sequencing

  • Machine learning
  • mass spectrometry
  • python
  • Dockerfile
  • Makefile
  • Python
  • + 1
2
0

Xenon Docker images

For your testing needs a collection of Docker images with different file systems and batch schedulers.

  • High performance computing
  • Workflow technologies
  • Clojure
  • Dockerfile
  • Python
  • + 4
7
0

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  • CSS
  • Dockerfile
  • HTML
  • + 5
0
0