All software
RTpipeline
RTpipeline is a comprehensive, research-grade pipeline that transforms raw DICOM radiotherapy exports into analysis-ready data. It bridges the technical gap between clinical Treatment Planning Systems (TPS) and statistical/ML analysis
- Clinical workflow and applications
- Dockerfile
- HTML
- Jupyter Notebook
- + 2
RTToolbox
RTToolbox is a software library to support quantitative analysis of treatment outcome for radiotherapy.
- Treatment Planning and dosimetry
- C
- C++
- CMake
Rucio policy package for KM3NeT
Package with custom policies for the Rucio instance of KM3NeT.
- Big data
- Data management
- Python
docker sandbox templates
Enhanced docker sandbox templates for using AI agents in a secure vm-based sandbox
- AI agent
- docker
- LLM security
- + 2
- Dockerfile
- HCL
- Makefile
- + 1
Satsense
A Python library for land use classification based in satellite images.
- Image processing
- Machine learning
- Jupyter Notebook
- Python
Scholy – Core
This project is part of Scholy, a linked open data platform for realizing directories of scholar.
- Grails
- RDF
- scholar directory
- + 3
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
scikit-talk
Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.
- conversation
- language corpora
- turn-taking
- Python
- Shell
sci-render-kit
Declarative scientific-figure compiler with explicit uncertainty semantics, accessibility intent, communication audits, provenance sidecars, portable figure evidence, and publisher-target boundaries
- Accessibility
- figure provenance
- Reproducibility
- + 3
- JavaScript
- Makefile
- Python
- + 1
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- R
Sentinel
Sentinel is an automated log-file analysis application for Varian linacs (TrueBeam, Halcyon, Edge).
- Quality Assurance
- HTML
GitHub action to set up apptainer
GitHub action for setting up apptainer in a Continous Integration job
- High performance computing
- JavaScript
- Shell
- TypeScript