All software
haddock3
Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.
- biomolecular complexes
- docking
- energetics
- + 4
- BitBake
- C
- C++
- + 11
COPASI
COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.
- Dynamics
- optimization
- Parameter estimation
- + 3
- Batchfile
- C
- C#
- + 17
Parallel Ice Sheet Model (PISM)
An open-source modelling framework for ice sheets and glaciers
- C++
- geophysics
- Glacier
- + 5
- C
- C++
- CMake
- + 9
AMUSE
Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.
- High performance computing
- Multi-scale & multi model simulations
- Workflow technologies
- Assembly
- C
- C++
- + 23
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
- Building
- Point Cloud
- Surface-reconstruction
- + 1
- Automake
- C
- C++
- + 8
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- C
- C++
- Dockerfile
- + 4
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Batchfile
- C
- C++
- + 10
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- C
- CMake
- Fortran
- + 8
Uncertainty Specification and Analysis for Thermosphere Observations
Uncertainty Specification and Analysis for Thermosphere Observations
- Accelerometer
- GNSS tracking
- Mass density
- + 2
- C
- C++
- Fortran
- + 3
Source code for INCS (Iterative Nonlinear Contrast Source)
Source code for INCS (Iterative Nonlinear Contrast Source)
- INCS
- medical ultrasound
- microbubbles
- + 1
- Automake
- C
- Fortran
- + 5
UMAT_for_Viscoelastictiy
User-Defined Material Subroutine for Viscoelastic Paving Materials including the Aging Effect
- Aging effects
- Asphalt materials
- Carbonyl area index
- + 2
- Fortran
- Markdown
- Other
- + 1
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- C
- C++
- CMake
- + 15