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Cover image for 3D Slicer

3D Slicer

3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.

  • 3D
  • 3DSlicer
  • Extension
  • + 7
  • C++
  • Python
  • CMake
  • + 5
4
5
Cover image for AMBER

AMBER

A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.

  • Big data
  • GPU
  • High performance computing
  • + 1
  • C++
  • CMake
3
24
Cover image for AMUSE

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

  • High performance computing
  • Multi-scale & multi model simulations
  • Workflow technologies
  • AMPL
  • C
  • Fortran
  • + 25
6
6
Cover image for Compas Toolkit

Compas Toolkit

The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.

  • GPU
  • High performance computing
  • MRI
  • Cuda
  • C++
  • Julia
  • + 4
3
0
Cover image for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2501
Cover image for cudawrappers

cudawrappers

The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVRTC, and cuFFT.

  • accelerators
  • CUDA
  • GPU
  • C++
  • CMake
  • Python
  • + 1
12
0
Cover image for DALES

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

  • Fortran
  • C
  • TeX
  • + 8
24
11
Cover image for DuMux

DuMux

DuMux is short for "DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media". It is an open-source simulator and research code in modern C++. It provides a framework for the implementation and application of porous media model concepts and constitutive relations.

  • porous media
  • Simulation
  • C++
  • CMake
  • Python
  • + 2
1
0
Cover image for Eigencuda

Eigencuda

Offload Eigen matrix-matrix multiplications to an Nvidia GPU

  • GPU
  • High performance computing
  • C++
  • CMake
2
0
Cover image for FastMLC

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

  • Big data
  • Machine learning
  • Visualization
  • C++
  • C
  • Makefile
  • + 5
5
11
Cover image for Davidson diagonalization in Fortran

Davidson diagonalization in Fortran

This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix

  • High performance computing
  • Fortran
  • CMake
  • Python
3
0
Cover image for grpc4bmi

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

  • Multi-scale & multi model simulations
  • Python
  • C++
  • Dockerfile
  • + 5
3
0